Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00059521 |
| length | 1829 |
| RNA type | mRNA |
| GC content | 0.46 |
| exon number | 11 |
| gene id | XLOC_030463 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_007116.7 |
| NCBI id | CM002889.2 |
| chromosome length | 72500376 |
| location | 54422941 ~ 54453848 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0042981 | regulation of apoptotic process | biological_process |
| GO:0070534 | protein K63-linked ubiquitination | biological_process |
| GO:0007250 | activation of NF-kappaB-inducing kinase activity | biological_process |
| GO:0046328 | regulation of JNK cascade | biological_process |
| GO:0046330 | positive regulation of JNK cascade | biological_process |
| GO:0033209 | tumor necrosis factor-mediated signaling pathway | biological_process |
| GO:0043122 | regulation of I-kappaB kinase/NF-kappaB signaling | biological_process |
| GO:0043123 | positive regulation of I-kappaB kinase/NF-kappaB signaling | biological_process |
| GO:0051865 | protein autoubiquitination | biological_process |
| GO:0007165 | signal transduction | biological_process |
| GO:0009898 | cytoplasmic side of plasma membrane | cellular_component |
| GO:0005737 | cytoplasm | cellular_component |
| GO:0098802 | plasma membrane signaling receptor complex | cellular_component |
| GO:0046872 | metal ion binding | molecular_function |
| GO:0004842 | ubiquitin-protein transferase activity | molecular_function |
| GO:0005164 | tumor necrosis factor receptor binding | molecular_function |
| GO:0031625 | ubiquitin protein ligase binding | molecular_function |
| GO:0008270 | zinc ion binding | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-030131-5345 | Predicted to enable tumor necrosis factor receptor binding activity; ubiquitin protein ligase binding activity; and ubiquitin-protein transferase activity. Predicted to be involved in several processes, including positive regulation of NF-kappaB transcription factor activity; positive regulation of intracellular signal transduction; and tumor necrosis factor-mediated signaling pathway. Predicted to act upstream of or within several processes, including activation of NF-kappaB-inducing kinase activity; protein autoubiquitination; and regulation of JNK cascade. Predicted to be located in cytosol. Predicted to be active in cytoplasmic side of plasma membrane. Orthologous to human TRAF2 (TNF receptor associated factor 2). |
| ensembl_id | ENSDART00000165672 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00061788 | lncRNA | upstream | 1231787 | 53191662 ~ 53192805 (+) | True | XLOC_030455 |
| TCONS_00061462 | lncRNA | upstream | 1233525 | 53188004 ~ 53191067 (+) | True | XLOC_030454 |
| TCONS_00059496 | lncRNA | upstream | 1982100 | 52438392 ~ 52442492 (+) | True | XLOC_030449 |
| TCONS_00061787 | lncRNA | upstream | 2396861 | 52015419 ~ 52027731 (+) | True | XLOC_030444 |
| TCONS_00059487 | lncRNA | upstream | 2408701 | 52014665 ~ 52015891 (+) | False | XLOC_030444 |
| TCONS_00061789 | lncRNA | downstream | 28413 | 54481759 ~ 54482750 (+) | False | XLOC_030464 |
| TCONS_00061463 | lncRNA | downstream | 28435 | 54481781 ~ 54482867 (+) | True | XLOC_030464 |
| TCONS_00061790 | lncRNA | downstream | 257677 | 54711023 ~ 54711655 (+) | True | XLOC_030470 |
| TCONS_00061791 | lncRNA | downstream | 612436 | 55065782 ~ 55074200 (+) | False | XLOC_030472 |
| TCONS_00061792 | lncRNA | downstream | 612442 | 55065788 ~ 55074200 (+) | False | XLOC_030472 |
| TCONS_00059519 | mRNA | upstream | 9528 | 54400971 ~ 54415064 (+) | True | XLOC_030462 |
| TCONS_00059517 | mRNA | upstream | 130506 | 54280135 ~ 54294086 (+) | False | XLOC_030461 |
| TCONS_00059518 | mRNA | upstream | 130506 | 54280187 ~ 54294086 (+) | True | XLOC_030461 |
| TCONS_00059515 | mRNA | upstream | 515918 | 53876169 ~ 53908674 (+) | True | XLOC_030459 |
| TCONS_00059513 | mRNA | upstream | 559136 | 53824959 ~ 53865456 (+) | False | XLOC_030458 |
| TCONS_00059523 | mRNA | downstream | 44129 | 54497475 ~ 54499044 (+) | False | XLOC_030465 |
| TCONS_00059524 | mRNA | downstream | 44132 | 54497478 ~ 54499117 (+) | False | XLOC_030465 |
| TCONS_00059525 | mRNA | downstream | 44140 | 54497486 ~ 54499035 (+) | False | XLOC_030465 |
| TCONS_00059526 | mRNA | downstream | 44384 | 54497730 ~ 54499050 (+) | True | XLOC_030465 |
| TCONS_00059527 | mRNA | downstream | 47759 | 54501105 ~ 54542062 (+) | True | XLOC_030466 |
| TCONS_00059516 | other | upstream | 316078 | 54106010 ~ 54108514 (+) | True | XLOC_030460 |
| TCONS_00059514 | other | upstream | 561358 | 53824969 ~ 53863234 (+) | True | XLOC_030458 |
| TCONS_00059512 | other | upstream | 667087 | 53700294 ~ 53757505 (+) | True | XLOC_030457 |
| TCONS_00059510 | other | upstream | 816889 | 53581489 ~ 53607703 (+) | False | XLOC_030457 |
| TCONS_00059495 | other | upstream | 2198787 | 52225684 ~ 52225805 (+) | True | XLOC_030448 |
| TCONS_00059541 | other | downstream | 1218120 | 55671466 ~ 55671582 (+) | True | XLOC_030479 |
| TCONS_00059549 | other | downstream | 1793390 | 56246736 ~ 56248735 (+) | True | XLOC_030488 |
| TCONS_00059550 | other | downstream | 1802842 | 56256188 ~ 56258166 (+) | True | XLOC_030489 |
| TCONS_00059556 | other | downstream | 1836789 | 56290135 ~ 56305811 (+) | True | XLOC_030492 |
| TCONS_00059578 | other | downstream | 3584426 | 58037772 ~ 58037886 (+) | True | XLOC_030510 |
