XLOC_030459 (naa38)


Basic Information

Item Value
gene id XLOC_030459
gene name naa38
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 53876169 ~ 53908674 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00059515
TGCGAACCGCCAATAAACACcaggaaaaagaagaagaagaagtccGGAGGCTCTAATGGCATCACAGAGGGAAGAGAACAGCACACAAATGCAAAATGAGGTGGTGGAGCTTGCTTATTCGCTGGCTCGATGTAAACTGGAGAACCTTCTTAATAAGAGCATGAGAATCCGGATGACAGATGGTCGCACACTGGTGGGGCTCTTTCTGTGCACAGACAGAGACTGCAACGTCATCCTGGGATCTGCACAAGAATTCCTCAAATCCACAGATTCTCTTTCACAAGGTGAGCCCAGAGTCTTGGGACTGGCTATGATCCCTGGCCATCATGTGGTGTCTATAGAAGTGGAAACCGAAAGCCTTCAGACTACCACCCATGGACTCTGACAACTTCAGAGACATTCGGGGTCACCGTGTGAACAACAGAGAATGCCACAAACATTTGTGTCTGCAACAACAGAGATGGCAGGGAAGATTTGCTATTGTTGAGGTCGGGTTGGTCCTCTATTAAAGCTAAAGTATTGATATGACTGTACCATTTTGCTTTTGAATTTGCTTGTTTGAATCAAAAGTATGGATATGACTGTGTCATTTTGCTTTTGAATTTGTTTGTCTGTGACCAGTTCACAATGTGTGTAGAATTAATGACACTTATGATTCAATAAGAGACAGATGAAGTACAATTCTGGATTGTctttattattagctttaataatatatttacatgGTCCCATCAGAAGCAGTG

Function

symbol description
naa38 Predicted to be involved in negative regulation of apoptotic process. Predicted to be located in cytoplasm and nucleus. Predicted to be part of NatC complex. Orthologous to human NAA38 (N-alpha-acetyltransferase 38, NatC auxiliary subunit).

GO:

id name namespace
GO:0043066 negative regulation of apoptotic process biological_process
GO:0005844 polysome cellular_component
GO:0005634 nucleus cellular_component
GO:0031417 NatC complex cellular_component
GO:0005737 cytoplasm cellular_component

KEGG:

id description
ko04131 Membrane trafficking

ZFIN:

id description
ZDB-GENE-030131-7762 Predicted to be involved in negative regulation of apoptotic process. Predicted to be located in cytoplasm and nucleus. Predicted to be part of NatC complex. Orthologous to human NAA38 (N-alpha-acetyltransferase 38, NatC auxiliary subunit).

Ensembl:

ensembl_id ENSDARG00000099122

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00059515 True 743 mRNA 0.43 3 53876169 53908674

Neighbor

gene id symbol gene type direction distance location
XLOC_030458 sat2b coding upstream 10713 53824959 ~ 53865456 (+)
XLOC_030457 taf6 coding upstream 110691 53580846 ~ 53765478 (+)
XLOC_030456 BX323994.1 coding upstream 391380 53479576 ~ 53484789 (+)
XLOC_030455 NA coding upstream 683364 53191662 ~ 53192805 (+)
XLOC_030454 NA coding upstream 685102 53188004 ~ 53191067 (+)
XLOC_030460 CR450749.2 coding downstream 197336 54106010 ~ 54108514 (+)
XLOC_030461 rangrf coding downstream 371461 54280135 ~ 54294086 (+)
XLOC_030462 bspry coding downstream 492297 54400971 ~ 54415064 (+)
XLOC_030463 traf2b coding downstream 514267 54422941 ~ 54453848 (+)
XLOC_030464 NA coding downstream 573085 54481759 ~ 54482867 (+)
XLOC_030449 BX957336.2 non-coding upstream 1433677 52438392 ~ 52442492 (+)
XLOC_030448 FP016029.1 non-coding upstream 1650364 52225684 ~ 52225805 (+)
XLOC_030446 AL935198.1 non-coding upstream 1818615 52055227 ~ 52057554 (+)
XLOC_030470 NA non-coding downstream 802349 54711023 ~ 54711655 (+)
XLOC_030472 NA non-coding downstream 1157108 55065782 ~ 55074200 (+)
XLOC_030473 CU207241.1 non-coding downstream 1210836 55119510 ~ 55123220 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000059_00071798_00072160 NA coding CI01000059 null 71798 ~ 72224 (+)
rainbow trout (Oncorhynchus mykiss) LOC110531706 naa38 misc NC_048573.1 CM023227.2 20079382 ~ 20082084 (+)