XLOC_030470



Basic Information


Item Value
gene id XLOC_030470
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information


Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 54711023 ~ 54711655 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence


>TCONS_00061790
GCTGtagctttacatttttaatagccaaaacaaataaaattcttatttacaaaatatttcctcgctacacacacacacacactaaacttaCATAACAAATATATTCAAAATTGACAATCCATTGCAGTGGCACATTATCAAAACCATTAGTTTAATTGGTCCAATAACAAAATGTGGTTTAAATCATGCGTTCATAAAGCAGCACTTTGACTAAAcccaagcaaaaaacaaaaccaagtcAGTTTAACTAAAACTAGCAGAAATAGTCCTTGTATTCAGTAACCCGCTCAATGGTGATAGTGACTTGATTCCATACCATCCTAGCCCTAAAGCTAAAATGTTCATACAAAACTTACAAGTACGCTGAAgcttaaaactttaaaaagtttatttgaaTTCAAATGTACAAACTTGCAAAAACACTTTGAATCATTAAAAGATTACTTTTGCTCAACCCATGGCAGTGAAGAAATCCGtaaaataaattgcaataaaaagGTTCAACAGTAAAACATGCATAAGTTACAATTTTTACAAGGAGGACTTGAGCTGAGAAATTG

Function


GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA


RNA id representative length rna type GC content exon number start site end site
TCONS_00061790 True 560 lncRNA 0.32 2 54711023 54711655

Neighbor


gene id symbol gene type direction distance location
XLOC_030469 pmchl coding upstream 25313 54685175 ~ 54685710 (+)
XLOC_030468 npr2 coding upstream 49067 54580962 ~ 54661956 (+)
XLOC_030467 anapc2 coding upstream 130459 54555567 ~ 54580564 (+)
XLOC_030466 tprn coding upstream 168961 54501105 ~ 54542062 (+)
XLOC_030465 tmem203 coding upstream 211906 54497475 ~ 54499117 (+)
XLOC_030471 cd180 coding downstream 226979 54938634 ~ 54941004 (+)
XLOC_030472 NA coding downstream 354127 55065782 ~ 55074200 (+)
XLOC_030473 CU207241.1 coding downstream 407855 55119510 ~ 55123220 (+)
XLOC_030474 NA coding downstream 422950 55134605 ~ 55140137 (+)
XLOC_030475 NA coding downstream 434978 55146633 ~ 55154249 (+)
XLOC_030464 NA non-coding upstream 228156 54481759 ~ 54482867 (+)
XLOC_030460 CR450749.2 non-coding upstream 602509 54106010 ~ 54108514 (+)
XLOC_030455 NA non-coding upstream 1518218 53191662 ~ 53192805 (+)
XLOC_030454 NA non-coding upstream 1519956 53188004 ~ 53191067 (+)
XLOC_030449 BX957336.2 non-coding upstream 2268531 52438392 ~ 52442492 (+)
XLOC_030479 BX323563.1 non-coding downstream 959811 55671466 ~ 55671582 (+)

Expression



Co-expression Network