XLOC_030471 (cd180)


Basic Information

Item Value
gene id XLOC_030471
gene name cd180
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 54938634 ~ 54941004 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00059532
TATTCTTTTCTGTCCTGTAGAAAATggagagtttttttgttttttacatgtcATTTTACTCTAttctttttcactttttagtCTTTAATGAAGCAACACCATGGGCGAGAAGACATTGTCAACAGGTACAATTATGGTATTAATGTCGAATGTTAAATTAAGATactgttaatgttttattttgtttcattgtgTGTTTCAGATAACTAAAGGTTACGATTGTAATGATATGGACCTACAATCAATCCCAGATGAGATACCAAATTCTGTTCAAATTTTGCAATTCAGCTTCAATTATCTGCCTGCGCTGTACAATTCCACCTTTCAGAGGCTAAAAAGCTTACGTTCTTTAGATGTGACAAGATGCAGCATCACTTTCATATATGAAGATGTGTTTACATATCAGCCTCACTTGGAGGTCCTTCTCCTAACTGGAAACCCTCTTGTGTTCATCGCAAGTACAGCTTTCTCTGGACCACTAGCATTGAAATATCTAAGCCTAGTTCAGTCAAAGATCAAACAACTGTCAGACATCCCATCTGAAAATCTTGCTTATTTAGAGGTTTTGGACCTCAGGGGAAGTAACATTCGCTCATTAAATGGACTAAGCAATTTTCGCTGGCAAAATTTGAAGAGCTTGCAGCTTGACTTAAACTTTATTGACCGGATAAGTTTTAATGACCTACAACCATTCAGCAACCTGGCTGGGGTGAGCATCAGCTTCAAAGGAAATGATTTCATCTATATAGAACCCGGTGCTTTTCATTCACTGAATCTAAGTAGTCTTGATTTTAGTGGCTGCTTAAATAAGATGAACAT
>TCONS_00059533
GAAAATggagagtttttttgttttttacatgtcATTTTACTCTAttctttttcactttttagtCTTTAATGAAGCAACACCATGGGCGAGAAGACATTGTCAACAGATAACTAAAGGTTACGATTGTAATGATATGGACCTACAATCAATCCCAGATGAGATACCAAATTCTGTTCAAATTTTGCAATTCAGCTTCAATTATCTGCCTGCGCTGTACAATTCCACCTTTCAGAGGCTAAAAAGCTTACGTTCTTTAGATGTGACAAGATGCAGCATCACTTTCATATATGAAGATGTGTTTACATATCAGCCTCACTTGGAGGTCCTTCTCCTAACTGGAAACCCTCTTGTGTTCATCGCAAGTACAGCTTTCTCTGGACCACTAGCATTGAAATATCTAAGCCTAGTTCAGTCAAAGATCAAACAACTGTCAGACATCCCATCTGAAAATCTTGCTTATTTAGAGGTTTTGGACCTCAGGGGAAGTAACATTCGCTCATTAAATGGACTAAGCAATTTTCGCTGGCAAAATTTGAAGAGCTTGCAGCTTGACTTAAACTTTATTGACCGGATAAGTTTTAATGACCTACAACCATTCAGCAACCTGGCTGGGGTGAGCATCAGCTTCAAAGGAAATGATTTCATCTATATAGAACCCGGTGCTTTTCATTCACTGAATCTAAGTAGTCTTGATTTTAGTGGCTGCTTAAATAAGATGAACATCTCATCCCTCCTGAAAGGTCTTGAAGGAATTAAAACCAACAGACTGAACCTGGGACTGTATGAAACTGATTCAAACGTATACATAGCATCAGCTGCGCTACAATCTTTTTGCAACATCTTCGTAAGTGATCTGGATTTCCAGCTTCAGCATTTCTTAGACCTAAATAATAGTACTTTTCATTGCCTTGAAGGACTTAAAAAGCTTGACCTTACTAGAGCTCATCTGAATGCATTGCCCTTGAACACAACTGGCTTGTCCACATTGTCACATCTTATTCTAGATGAGAACCAATTTAAAGATGTCTGCCAGAGCAACACTAGAAATTTCCCCATGCTTACACACTTATCCATAAGTGGAAATTTGAAGAAACTTACTTTCAGCAATAGATGCTTGGACAGTCTTGGACTGTTAGAGGAGCTGGACCTTAGTGTTAGTTTAGTAAACCCCAGAGAACCTTGTTGTAATAACCAACTGTTTGGGCTTGGCGAATTGAAGCTTCTCAATCTAAGCTATGGGTCACCAATGTTCTGGAGTTCAAAGCCTTTCAACGTGACTCCAAAATTAGAGCACTTAGACTTCAGCCATTCAGTTTACACTCTACTGAACGATAGCTCACCTTTCAGTAATCTGCAGAGTCTCAGAACTCTAAATCTTTCTTGGTCAAATACAGATCTGACAAACGTGCACCTTTTCGTTGGCTTGAAGGCCTTGCAACATCTCAATTTGAGGGGGAACGCCATTCAAGGAGAGGTTCTCACTCAAACGGAACTCTTTAAATGTGTGCCTCTTTTGGAGACCTTAGTtttgtctgcatgcaaaataactTCATTTGATGAGAACTTGTTTAAAGGTCTTAGACATCTCAATCATATAGACCTGAGTGAAAACAAGTTTGTCAAACTGAGCACCTCTGGATTTTACTCGCTTGATTTTCTCAAACTTAACTTCGCCAGAAATGATATTACAACTGTGGATGTTGCAAGTGTTGCGGATTTGGGAGAAGAGGGTTCTGTTGATCTGAGCTACAATCCCCTGGTTTGCAACTGTAGCAACTTTGAGTTCATCCACTGGGTTAAGAAAAATAAAGTCAAAGTAAAGCATTTAATGGAGACATTTTGTAATGGGACAGGGACAAGGATTATTGATGCTAAACTGCAATGTGACCTTCCTGTAGGTGTACTTGTGTTTTGCGCAGTTCTAGCTGCAGTTCTACTTGCATCTGCAATCTTCTTGCTCATAAGGAGAGTAAGGAAATATTCTATATACACAAACCTGTAAATTCATAAGATTTATTTGGTCTCCCTCCAAATGCAAACGTATATCAttctattttaataatattgtataacATTGATATATTGAGCCAATGTTGATTTTGATTTAGTAGTGTAATATGTTGTAACTGAGAAAATAAATGGTTCTAAAAACGTGAATCTGTTCAACAAAAATTAtgttgtgg

Function

symbol description
cd180 Predicted to enable transmembrane signaling receptor activity. Acts upstream of or within defense response to virus. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in extracellular matrix and extracellular space. Is expressed in several structures, including digestive system; eye; heart; integument; and pleuroperitoneal region. Orthologous to human CD180 (CD180 molecule).

GO:

id name namespace
GO:0051607 defense response to virus biological_process
GO:0031012 extracellular matrix cellular_component
GO:0005615 extracellular space cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
ko04090 CD molecules

ZFIN:

id description
ZDB-GENE-070705-323 Predicted to enable transmembrane signaling receptor activity. Acts upstream of or within defense response to virus. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in extracellular matrix and extracellular space. Is expressed in several structures, including digestive system; eye; heart; integument; and pleuroperitoneal region. Orthologous to human CD180 (CD180 molecule).

Ensembl:

ensembl_id ENSDARG00000093750

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00059532 False 819 mRNA 0.36 2 54938634 54939544
TCONS_00059533 True 2183 mRNA 0.38 3 54938653 54941004

Neighbor

gene id symbol gene type direction distance location
XLOC_030470 NA coding upstream 226979 54711023 ~ 54711655 (+)
XLOC_030469 pmchl coding upstream 252924 54685175 ~ 54685710 (+)
XLOC_030468 npr2 coding upstream 276678 54580962 ~ 54661956 (+)
XLOC_030467 anapc2 coding upstream 358070 54555567 ~ 54580564 (+)
XLOC_030466 tprn coding upstream 396572 54501105 ~ 54542062 (+)
XLOC_030472 NA coding downstream 124778 55065782 ~ 55074200 (+)
XLOC_030473 CU207241.1 coding downstream 178506 55119510 ~ 55123220 (+)
XLOC_030474 NA coding downstream 193601 55134605 ~ 55140137 (+)
XLOC_030475 NA coding downstream 205629 55146633 ~ 55154249 (+)
XLOC_030476 tmc2a coding downstream 280589 55221593 ~ 55251994 (+)
XLOC_030464 NA non-coding upstream 455767 54481759 ~ 54482867 (+)
XLOC_030460 CR450749.2 non-coding upstream 830120 54106010 ~ 54108514 (+)
XLOC_030455 NA non-coding upstream 1745829 53191662 ~ 53192805 (+)
XLOC_030454 NA non-coding upstream 1747567 53188004 ~ 53191067 (+)
XLOC_030479 BX323563.1 non-coding downstream 730462 55671466 ~ 55671582 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000059_00691603_00693842 NA coding CI01000059 null 690594 ~ 694074 (+)