RNA id: TCONS_00059512


Basic Information

Item Value
RNA id TCONS_00059512
length 922
RNA type processed_transcript
GC content 0.47
exon number 9
gene id XLOC_030457
representative True

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 53580846 ~ 53765478 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CTTGAGTGTGGCTATGGTGAGTTGTGCCATGCACAAATGCTAATGCTTCACCACATCATTCTGTGTTGacacactgaacattttcctgttttatttttgtttagCTCACTGGCTAAGTATAGATGGTGTCCAGCCTGCAATTCCAGAGAACCCACCTTCTGcTTCTAAAGAGCAGCAGAAGGCAGAGTCTACTGAGCCGCTTAAAGCTGTCAAACCTGGACAGGAAGACGAAGGCTTTATTCAAGCCAAGGGTCAGAGTGCAGTTTCTGCTGAAGTCAAAGGAAAGGAAAAGATGCGGATGAAACCACGTAGCACACATGAGCTCTCTGTGGAGCAGCAGTTGTACTATAAAGAAATTACTGAAGCCTGTGTGGGATCCTGTGAAGCCAAAAGAGCGGAGGCACTGCAGAGCATAGCCACCGACCCAGGGCTGTACCAAATGCTGCCAAGGTTCAGTACCTTCATCTCGGAGGGTGTGCGTGTAAATGTTGTTCAGAATAACTTGGCTTTGCTGATATATTTGATGAGGATGGTGAAGGCTCTAATGGACAATCCAACTCTATATTTGGAGAAATATCTCCATGAGTTGATCCCCGCGGTGGTGACATGTATTGTGAGTAAGCAACTGTGTTTGAGGCCTGATGTAGACAATCACTGGGCTCTGCGAGACTTTGCTGCCCGGTTAATGGCTCAGAGCTGCAAAACATTCAGCACCACAACCAACAACATCCAGTCGCGTATCACCAAAACCTTTACTAAGGCATTGTTGGATGAAAAGACTCAGTGGACAACTCGTTATGGCTGCATTGCTGGACTTGCTGAACTTGGGCATGATGTGATAAAGACTTTGATCATCCCCCGACTGTTTGTAGAGGGTGCCCGTATTAAAGCAGTGATGGATGGGCCAGTGGTATCCAATATT

Function

GO:

id name namespace
GO:0006352 DNA-templated transcription, initiation biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0006367 transcription initiation from RNA polymerase II promoter biological_process
GO:0016573 histone acetylation biological_process
GO:0045944 positive regulation of transcription by RNA polymerase II biological_process
GO:0000124 SAGA complex cellular_component
GO:0005634 nucleus cellular_component
GO:0046695 SLIK (SAGA-like) complex cellular_component
GO:0005669 transcription factor TFIID complex cellular_component
GO:0003713 transcription coactivator activity molecular_function
GO:0016251 RNA polymerase II general transcription initiation factor activity molecular_function
GO:0046982 protein heterodimerization activity molecular_function

KEGG:

id description
ko03022 Basal transcription factors
ko03021 Transcription machinery
ko03036 Chromosome and associated proteins

ZFIN:

id description
ZDB-GENE-040912-23 Predicted to enable transcription coactivator activity. Predicted to contribute to RNA polymerase II general transcription initiation factor activity. Predicted to be involved in RNA polymerase II preinitiation complex assembly. Predicted to act upstream of or within transcription initiation from RNA polymerase II promoter. Predicted to be part of transcription factor TFIID complex. Orthologous to human TAF6 (TATA-box binding protein associated factor 6).

Ensembl:

ensembl_id ENSDART00000170599

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00061788 lncRNA upstream 507489 53191662 ~ 53192805 (+) True XLOC_030455
TCONS_00061462 lncRNA upstream 509227 53188004 ~ 53191067 (+) True XLOC_030454
TCONS_00059496 lncRNA upstream 1257802 52438392 ~ 52442492 (+) True XLOC_030449
TCONS_00061787 lncRNA upstream 1672563 52015419 ~ 52027731 (+) True XLOC_030444
TCONS_00059487 lncRNA upstream 1684403 52014665 ~ 52015891 (+) False XLOC_030444
TCONS_00061789 lncRNA downstream 724254 54481759 ~ 54482750 (+) False XLOC_030464
TCONS_00061463 lncRNA downstream 724276 54481781 ~ 54482867 (+) True XLOC_030464
TCONS_00061790 lncRNA downstream 953518 54711023 ~ 54711655 (+) True XLOC_030470
TCONS_00061791 lncRNA downstream 1308277 55065782 ~ 55074200 (+) False XLOC_030472
TCONS_00061792 lncRNA downstream 1308283 55065788 ~ 55074200 (+) False XLOC_030472
TCONS_00059506 mRNA upstream 215505 53479576 ~ 53484789 (+) False XLOC_030456
TCONS_00059505 mRNA upstream 215505 53479576 ~ 53484789 (+) False XLOC_030456
TCONS_00059507 mRNA upstream 215505 53482597 ~ 53484789 (+) True XLOC_030456
TCONS_00059504 mRNA upstream 632360 53009083 ~ 53067934 (+) True XLOC_030453
TCONS_00059502 mRNA upstream 837489 52844681 ~ 52862805 (+) True XLOC_030452
TCONS_00059513 mRNA downstream 67454 53824959 ~ 53865456 (+) False XLOC_030458
TCONS_00059515 mRNA downstream 118664 53876169 ~ 53908674 (+) True XLOC_030459
TCONS_00059517 mRNA downstream 522630 54280135 ~ 54294086 (+) False XLOC_030461
TCONS_00059518 mRNA downstream 522682 54280187 ~ 54294086 (+) True XLOC_030461
TCONS_00059519 mRNA downstream 643466 54400971 ~ 54415064 (+) True XLOC_030462
TCONS_00059510 other upstream 92591 53581489 ~ 53607703 (+) False XLOC_030457
TCONS_00059495 other upstream 1474489 52225684 ~ 52225805 (+) True XLOC_030448
TCONS_00059489 other upstream 1642740 52055227 ~ 52057554 (+) False XLOC_030446
TCONS_00059491 other upstream 1643115 52055730 ~ 52057179 (+) True XLOC_030446
TCONS_00059490 other upstream 1643219 52055254 ~ 52057075 (+) False XLOC_030446
TCONS_00059514 other downstream 67464 53824969 ~ 53863234 (+) True XLOC_030458
TCONS_00059516 other downstream 348505 54106010 ~ 54108514 (+) True XLOC_030460
TCONS_00059541 other downstream 1913961 55671466 ~ 55671582 (+) True XLOC_030479
TCONS_00059549 other downstream 2489231 56246736 ~ 56248735 (+) True XLOC_030488
TCONS_00059550 other downstream 2498683 56256188 ~ 56258166 (+) True XLOC_030489

Expression Profile

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