XLOC_030452 (scarb2a)


Basic Information

Item Value
gene id XLOC_030452
gene name scarb2a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 52844681 ~ 52862805 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00059503
TCCGGGACGACGTCACCCAATAGAATCGCGAGCTCATCGGACAAAAGCAATGCGACAATCATTGCTTTCCTAGTGAGCCGCCCATTATTCATGTTCATTCACTAATGATTTAAGGAGACACGACAGGATATAGCGGAACGCGAAAACCTAACGGTCTCAAAGCTAATGACTGTACAAACATAAAACGCCATGCTGAGCAGTCATGACTGTTCTCTTACGTTTGTCAAcgcagtttttttgttgttgtttgtatgaCAATTTAGCATATAACTGTACTTGTATTCAAACAAAAAAACTTCACGAACCGCCCAAATTAAACGAATATCCGGAAATCAAGCGTAACATAAACGCAACACAAAGTCTTAGCAGTTTAAAAATgatgaaatatgaaaaaatatgctCTGATCCGTAAAAACACGCATTAACCATTACATTTGAAGCAGAACGGTAAAACTATGCTAACTTATTTACTTATGGCTTGCCTAAACATTCGTCTTGAAAACCCCTTTAAATCGTGACCTCAGCTAAGAGGGCGGTTTAACACGCCCCTCGCTCCAAAAAGTGGTTTCTCATGCGTGACTGTCTCATTTAAATGTAGTGAGGGAGGAAAAGACCTATGCTCCCTTTACGTTAGAGCTGATAGTCTCTTATCTGAGCATCCGAGAAATACTCCCGTTAATCGCACATCATTGCCGACGTCCTAATGATAGATAGAGGAAAACGATTCAAGCTGTGAGACTATCAGGAAAAAGGAAACATACTAGGACATTCTGTGGTAGAAGTTCTGAATTAGAgacaaaaatttgtattttttttatttttatacaaacagGCCAgtttaaaacgattaaaaatgaCTAGAAGATCTTGTACTATTTACGCCACAGGGATTGTGTGCGCTCATTTGCTAATTTTGGGAATCGCCCTTCTGCTGGCTCAAGTCTTCCAAACAATGATCCAAGAACGGATAAAAAAGGAGATCACGCTGGCTGAGAACAGCAGagtattggatggatggataaatccACCACCTCCTGTTTACATGCAGTATTTCTTCTTCAATGTTACCAATCCCGATGAGTTCTTGGCGGGGAAGGAAAAGGCCAAAGTTACTCAGATGGGGCCATATACCTACAGGGAATATCGACCAAGAGAAAATGTGACTTATCTTGAGAATGGGACAAAGATTTTTGCCACAAATCCCAAGAGCTTTGTGTTTCTTCGCAACATGTCAGCTGGAGATCCTGAGGTTGACCGTGTGACAACCGTTAATATTCCAATGATTgcaGTGATGAATGAGTTAAACTCCTACTCCTTCTTTGTGAGGACAGCTGTATCTATGTATATGGGGTCCATGGGCATGGGCCTGTTTATGAATCGTACAGTTCATGAGATCCTGTGGGGTTTCAAAGATCCACTTCTGACCAAACTCCACGCCATGAGACCAGAAGTGGATGAGCATTTTGGCCTCATGTACAATAAAAATGGAACCCATGAAGGTGAATTTGTcttccacactggagagaagaaTTACATGAACTATGGCAAGATTGATACGTGGAACGGCATCAGtCAGATGAATTGGTGGTCATCTAACCAGAGCAACATGATCAATGGTACTGATGGCAGTGTCTTCCATACCTTCCTGTCCAGAAAAGAGCTCCTCTACATCTTTGCTGCTGATCTCTGCCGATCTATCCATTTGGGTTACGTGAGGGACATGGAAGTGAAGGGCATCCCAGCCTTCCGCTTCGCTCCTCCTTCAGATGTACTAGCTCCTCCAGATGAGAACCCGGCAAATGCTGGCTTCTGCGTGCCTGCTGGAGACTGTCTAGGAAAAGGAGTCCTCAAAGTCAGCGTCTGTCGTCAAGGTGCACCCATTGTTGTGTCATTCCCTCATTTCTACCAAGCTGATGAGAGGTACATCAATGCCATTGAAGGGATGAATCCAAATGAGGAGGAACATGAAACATACCTCGACATCAACCCGACCACAGGGGTTCCTATTCGAGCTTGTAAGAGAGCTCAACTCAATATCATACTGAAGAGAGTGCGTGGCTTCCCTAACACAAAATTTCTCAATGAGACTATTTTCCCCATTATGTACGTCAATGAGACAGCAACTATTGATGATGAGTCTGCAGCCCAGATGAGGATGCTCCTGTTAATTGTAACAGTGGTATCCAACTTTCCAGTCATCATTTTGGCATTGGGGGTGATTTTACTTGTAGTCCTTATATTCCTCGTCTGCAGAAACCGCCAGAGAAagACAACAAAAGATGAAACTGCTTATACCCAAGTGAGCAACCAAGCAGAGGATTCACCAGAGAACCGCAACAATCAGCCATTGAGGAATGGATCATATATTGCCATGTCACCAGTGGAGGCACAAAAGTGTTGATGAAGATGACCGATGAACTTTCGCCTGAGGACATTATGTCTATTCTCaccattttttaatgtgttttacttTTCATCGCAGCAGTCTTCTTTGGGGGCCAGTCACCACCTTTGGCTGAGGGTCACGCATTTTACTAAAgacttttttcttttgtgtttgtttgtttccttgAGCATGGCCTTCTCAAACTGCCATATCAAAGCACCCAATTCAGTTTTGTAGAACCAACTCTGGGTTTCCAGAGGCTTCCGTTGCCTATTCCTCAGAGGCCTGAAACACACTCTTGCCTTTTTGAAAACACAAATATGCATTGCATGTTCACAGAGTCGTACACCCTCTGAGCATGAGTGTTCTAGATGGGTGAAAATACTGGGACCGCCTGTGCTCTTAAAGTGTTTCAAATCTCTTCTCACACTACTGTATACTGGTCAGCACAGGCAGACCTTGAACTAACACATCTCTTCATATGTCAAACCCTTTGATAATGAGCAGACAAATGCAAACTGTTGATTTCTCACCTCTAGAGTATTAGGGAGCTAAAAGGTCTAATATGCTTACAAAAACTGGGTCTTATCCaggacttttgtgtgtgtgtgtgtgtgtgtgtgtgtgaaagagagagattgcacatatgagtgtgtttgtaatTATATGTGAGTATTTCAGCAAGCATGTCGGTGCTTGCATGCTTTTGTCACATTGTGGTGAACTGCTCTGTTGGCTCACTGTTTAAACGACACAGTGTGACAGCAAGTGGAAAAAAATAGTGACAGTCCTTTCCATTTCACAGTGTCTGAAGTACATTCATTGGGATGTCAGAAACATTTCAGCTGTTACAAAAGGTCAGAAAGTCATTGTATTGCATAAATCGCTTAGTATTTTATAATGAACAAACAACACTCACAAGTGAGACTTGAATAATTCTGCCTTACAAATACTTAAGAACATAATGCGGTTCTGCTGCATGGCATTGGCAGGTGGAACTAGATGAATTGCCAACGAAACACGTCTGTTCTGTGATAGTGAGAGCACAAATATAGTATGCAGATCCCATGGTCTAATCGTAGCAGAAGGGGTTAAAGGTCAGCGAGTTTTGAGCAGTAAAGTTTTGCACAATTCTTTTCTGTGCAAGTCCAATTTATAATAACCCTCTGTGGGTGAAAGACCTAGCACTTGAATCACTACTTGTGTCTATTGCTTTTTTGTCCTTGATGTTCGTCGCCTTAAATGAATTGAGGCCATGTTTTAAGTCAACTAGAACAGGATGTATTAACTGCATACTTCACAAAATATTACTAAGGATGAGTGATCACATGTTGTCCAAATGGATGATTCCGTCTGAAGTTGACATAACTTTTGTGTATGTATGGATCTCTAAATTATTCTAGTTTTGGTGGAAAATTCTGGAATGATCGACCTTTGTTACTTTATGTAAATCATCTGTTACCTACTGTGACCACGGTTTTGGTGGCTTGCAGTGCACATTGTTGCGTATTTGCCTGTGCCATGATTTTGCTTATcctaaagatttagttttaaactgGAAACACAGCATTTGCAGTGTCTTATGCAGCTAAACTAAAAACTGAGGGAAAGTTGTTCAAGTTTTTGTGGAGTTTACTAGTCCATTACATTGACTCTCAGCGAGTAACACATTTTTCAGCCAAATTAGTATATGCATTTACATCAAAATGGTCTTTTCAGTTCTGAGACTGACAAAGACACACTGGACCATTGAGTTATAAGGTGGTTAAATGTAACGTGAGTTTAGTATGAACGATTTGTTAACCTGAGCCATTTCTGTACAGTTTTCTGTCCAGATTCCTTTATAGTGACTTTTGCCCCTGTGCGCTTGACCAAAGATTACACTGGGTTGGTAGATAACTGGTTTGTTTGCTTTCCTCACAGCTGTAGTGCCGTTGATTTTACCATTTACACAAGCATTAGAACCTCATTGCTTACAAGGgcaattaagtaaattaaaaaaatctgaaaatattttccTTAGTGTATTATGTGAGTTCATAATGTTTAATAACGCagagaaaataaaaagttgcCACAGTGTGCAAAGAAACTCTCAGTATTATGTATTTACACAGCAATACAATATGTAAAAAGCAAATTTTATAAtgaagtaaaaaggttttgtaatCAGACAGacaaatatttatgtatatatttgtgcattttctgaatttatgacttattttttagtctttttcatttattattttttttgtattattttggaaTATTATAAAATGGGGTCATCAAGGACATTTcgctttatttaaaacaaacaaaaaaaaaacttatgtagTACCAAGTGAATATTGTTCTAAATTCAAGAAGGAATGATGTATGTGCTTTGTAAAAACTTTGATGACAAAAGGCCTATGTTGTATGTGTTGGGTGTGAGCCTATGATGTGCAGTGATCTCCTGTTATACAGCTCAAATGGTCAACACTGTTTGTCCAACTGGAAAAACAAAGGGAAGGCTGAGTGTCTTTGAGTTCCTTATGGATAGATTGCCATAGTGCCATGTTGGGTACAAGGGAAATTTCCATTTGCAatctaatcttttttttcttagatGAATGATGCCCTCCTTCAGGAATGAACTTTTAGTGCCATGCcattgttgtttatttcacttgctTTAGTAGCAACATGTTTAAGCTGtgtacagtttttgttttcttctcaTGTCAAGCCTACATTTTAGAGCTGCAATTACAAACAAAATTCTGCATTACATCTTTGAGGGTGGTCTTAAAACACTGAATATCTCACAATGTCCTCTTGAGAtgcattgcattttttttcttctttttttttctttttgttttgctgcTGCTGAGAGTGACAATCCCTATGTCATGTTAGGTGCAAaatcatttcaaatatataaatatataatttttttagttttgataaTTTACACTGCACAAACTTTCTacaatgcttttgtaaacatttttagtgttatttgcaaaaaataaaaataaagttgaaattCTCATCACATGTCTGCTTTCCTCTTTGTTGTTGTGTGTAAATACAGATTTCAGAATTTTCAGACCAAGTAATTTCTTAAATGTATAAAGCTGtattttaggtttattttgtttcatattaattttactttttttttattctgaaccATGCATGTTCAAATTATgaatatgttttatagaattagtGAATAGTTATAAGTCTCAAGCTCAAGGCTCCATTCATTAGTCTGAAAAATGAAGTAAATCAGTAATCTATAATGTTAAACAGTAAACTATAGTAAAATCATTCCAATAAATTCTTAAGACTCACGGGACACTGAAGTCTAGAATGCTAAAAATTCATCAAATGAATAAGAATATTaattttgctttggcttagtcactGTTTCAgaggtcatcacagcagaatgaacctccaactatacgcagccgcaaaccagtactgagaaacactctaccctcattcacacacacttcatACTCCTACACTACGCCAgattagttttttcaattcaccttttgcacatctttggactgcggggaaaactggagcacccggaagaaaccatTCAAAGTACATACCATGCTccagaaaagaaatgtaaaacaagTATTTAACTTTGCTCATCCTCAGTTCTGAAATATTCAAGTAAGCTtttttattcataaggttttaactGAATCTGTGATCCTCTGTAATTAATGAAACGCTAAAAATGGCTACTGGCACCAAGGACCCagtttcagatttaaaaaaaatcttcttgaaTGTTCTACtgattttaataaaatgaaagacAGATAATATATGACCCtgcaccacaaaaccagtc
>TCONS_00059502
TCCGGGACGACGTCACCCAATAGAATCGCGAGCTCATCGGACAAAAGCAATGCGACAATCATTGCTTTCCTAGTGAGCCGCCCATTATTCATGTTCATTCACTAATGATTTAAGGAGACACGACAGGATATAGCGGAACGCGAAAACCTAACGGTCTCAAAGCTAATGACTGTACAAACATAAAACGCCATGCTGAGCAGTCATGACTGTTCTCTTACGTTTGTCAAcgcagtttttttgttgttgtttgtatgaCAATTTAGCATATAACTGTACTTGTATTCAAACAAAAAAACTTCACGAACCGCCCAAATTAAACGAATATCCGGAAATCAAGCGTAACATAAACGCAACACAAAGTCTTAGCAGTTTAAAAATgatgaaatatgaaaaaatatgctCTGATCCGTAAAAACACGCATTAACCATTACATTTGAAGCAGAACGGTAAAACTATGCTAACTTATTTACTTATGGCTTGCCTAAACATTCGTCTTGAAAACCCCTTTAAATCGTGACCTCAGCTAAGAGGGCGGTTTAACACGCCCCTCGCTCCAAAAAGTGGTTTCTCATGCGTGACTGTCTCATTTAAATGTAGTGAGGGAGGAAAAGACCTATGCTCCCTTTACGTTAGAGCTGATAGTCTCTTATCTGAGCATCCGAGAAATACTCCCGTTAATCGCACATCATTGCCGACGTCCTAATGATAGATAGAGGAAAACGATTCAAGCTGTGAGACTATCAGGAAAAAGGAAACATACTAGGACATTCTGTGGTAGAAGTTCTGAATTAGAgacaaaaatttgtattttttttatttttatacaaacagGCCAgtttaaaacgattaaaaatgaCTAGAAGATCTTGTACTATTTACGCCACAGGGATTGTGTGCGCTCATTTGCTAATTTTGGGAATCGCCCTTCTGCTGGCTCAAGTCTTCCAAACAATGATCCAAGAACGGATAAAAAAGGAGATCACGCTGGCTGAGAACAGCAGagtattggatggatggataaatccACCACCTCCTGTTTACATGCAGTATTTCTTCTTCAATGTTACCAATCCCGATGAGTTCTTGGCGGGGAAGGAAAAGGCCAAAGTTACTCAGATGGGGCCATATACCTACAGGGAATATCGACCAAGAGAAAATGTGACTTATCTTGAGAATGGGACAAAGATTTTTGCCACAAATCCCAAGAGCTTTGTGTTTCTTCGCAACATGTCAGCTGGAGATCCTGAGGTTGACCGTGTGACAACCGTTAATATTCCAATGATTgcaGTGATGAATGAGTTAAACTCCTACTCCTTCTTTGTGAGGACAGCTGTATCTATGTATATGGGGTCCATGGGCATGGGCCTGTTTATGAATCGTACAGTTCATGAGATCCTGTGGGGTTTCAAAGATCCACTTCTGACCAAACTCCACGCCATGAGACCAGAAGTGGATGAGCATTTTGGCCTCATGTACAATAAAAATGGAACCCATGAAGGTGAATTTGTcttccacactggagagaagaaTTACATGAACTATGGCAAGATTGATACGTGGAACGGCATCAGtCAGATGAATTGGTGGTCATCTAACCAGAGCAACATGATCAATGGTACTGATGGCAGTGTCTTCCATACCTTCCTGTCCAGAAAAGAGCTCCTCTACATCTTTGCTGCTGATCTCTGCCGATCTATCCATTTGGGTTACGTGAGGGACATGGAAGTGAAGGGCATCCCAGCCTTCCGCTTCGCTCCTCCTTCAGATGTACTAGCTCCTCCAGATGAGAACCCGGCAAATGCTGGCTTCTGCGTGCCTGCTGGAGACTGTCTAGGAAAAGGAGTCCTCAAAGTCAGCGTCTGTCGTCAAGGTGCACCCATTGTTGTGTCATTCCCTCATTTCTACCAAGCTGATGAGAGGTACATCAATGCCATTGAAGGGATGAATCCAAATGAGGAGGAACATGAAACATACCTCGACATCAACCCGACCACAGGGGTTCCTATTCGAGCTTGTAAGAGAGCTCAACTCAATATCATACTGAAGAGAGTGCGTGGCTTCCCTAACACAAAATTTCTCAATGAGACTATTTTCCCCATTATGTACGTCAATGAGACAGCAACTATTGATGATGAGTCTGCAGCCCAGATGAGGATGCTCCTGTTAATTGTAACAGTGGTATCCAACTTTCCAGTCATCATTTTGGCATTGGGGGTGATTTTACTTGTAGTCCTTATATTCCTCGTCTGCAGAAACCGCCAGAGAAagAATGAAGTAAAACGTATTGATTTTACTGAAGCTTTTCATTCTTTTGCTACAACAAAAGATGAAACTGCTTATACCCAAGTGAGCAACCAAGCAGAGGATTCACCAGAGAACCGCAACAATCAGCCATTGAGGAATGGATCATATATTGCCATGTCACCAGTGGAGGCACAAAAGTGTTGATGAAGATGACCGATGAACTTTCGCCTGAGGACATTATGTCTATTCTCaccattttttaatgtgttttacttTTCATCGCAGCAGTCTTCTTTGGGGGCCAGTCACCACCTTTGGCTGAGGGTCACGCATTTTACTAAAgacttttttcttttgtgtttgtttgtttccttgAGCATGGCCTTCTCAAACTGCCATATCAAAGCACCCAATTCAGTTTTGTAGAACCAACTCTGGGTTTCCAGAGGCTTCCGTTGCCTATTCCTCAGAGGCCTGAAACACACTCTTGCCTTTTTGAAAACACAAATATGCATTGCATGTTCACAGAGTCGTACACCCTCTGAGCATGAGTGTTCTAGATGGGTGAAAATACTGGGACCGCCTGTGCTCTTAAAGTGTTTCAAATCTCTTCTCACACTACTGTATACTGGTCAGCACAGGCAGACCTTGAACTAACACATCTCTTCATATGTCAAACCCTTTGATAATGAGCAGACAAATGCAAACTGTTGATTTCTCACCTCTAGAGTATTAGGGAGCTAAAAGGTCTAATATGCTTACAAAAACTGGGTCTTATCCaggacttttgtgtgtgtgtgtgtgtgtgtgtgtgtgaaagagagagattgcacatatgagtgtgtttgtaatTATATGTGAGTATTTCAGCAAGCATGTCGGTGCTTGCATGCTTTTGTCACATTGTGGTGAACTGCTCTGTTGGCTCACTGTTTAAACGACACAGTGTGACAGCAAGTGGAAAAAAATAGTGACAGTCCTTTCCATTTCACAGTGTCTGAAGTACATTCATTGGGATGTCAGAAACATTTCAGCTGTTACAAAAGGTCAGAAAGTCATTGTATTGCATAAATCGCTTAGTATTTTATAATGAACAAACAACACTCACAAGTGAGACTTGAATAATTCTGCCTTACAAATACTTAAGAACATAATGCGGTTCTGCTGCATGGCATTGGCAGGTGGAACTAGATGAATTGCCAACGAAACACGTCTGTTCTGTGATAGTGAGAGCACAAATATAGTATGCAGATCCCATGGTCTAATCGTAGCAGAAGGGGTTAAAGGTCAGCGAGTTTTGAGCAGTAAAGTTTTGCACAATTCTTTTCTGTGCAAGTCCAATTTATAATAACCCTCTGTGGGTGAAAGACCTAGCACTTGAATCACTACTTGTGTCTATTGCTTTTTTGTCCTTGATGTTCGTCGCCTTAAATGAATTGAGGCCATGTTTTAAGTCAACTAGAACAGGATGTATTAACTGCATACTTCACAAAATATTACTAAGGATGAGTGATCACATGTTGTCCAAATGGATGATTCCGTCTGAAGTTGACATAACTTTTGTGTATGTATGGATCTCTAAATTATTCTAGTTTTGGTGGAAAATTCTGGAATGATCGACCTTTGTTACTTTATGTAAATCATCTGTTACCTACTGTGACCACGGTTTTGGTGGCTTGCAGTGCACATTGTTGCGTATTTGCCTGTGCCATGATTTTGCTTATcctaaagatttagttttaaactgGAAACACAGCATTTGCAGTGTCTTATGCAGCTAAACTAAAAACTGAGGGAAAGTTGTTCAAGTTTTTGTGGAGTTTACTAGTCCATTACATTGACTCTCAGCGAGTAACACATTTTTCAGCCAAATTAGTATATGCATTTACATCAAAATGGTCTTTTCAGTTCTGAGACTGACAAAGACACACTGGACCATTGAGTTATAAGGTGGTTAAATGTAACGTGAGTTTAGTATGAACGATTTGTTAACCTGAGCCATTTCTGTACAGTTTTCTGTCCAGATTCCTTTATAGTGACTTTTGCCCCTGTGCGCTTGACCAAAGATTACACTGGGTTGGTAGATAACTGGTTTGTTTGCTTTCCTCACAGCTGTAGTGCCGTTGATTTTACCATTTACACAAGCATTAGAACCTCATTGCTTACAAGGgcaattaagtaaattaaaaaaatctgaaaatattttccTTAGTGTATTATGTGAGTTCATAATGTTTAATAACGCagagaaaataaaaagttgcCACAGTGTGCAAAGAAACTCTCAGTATTATGTATTTACACAGCAATACAATATGTAAAAAGCAAATTTTATAAtgaagtaaaaaggttttgtaatCAGACAGacaaatatttatgtatatatttgtgcattttctgaatttatgacttattttttagtctttttcatttattattttttttgtattattttggaaTATTATAAAATGGGGTCATCAAGGACATTTcgctttatttaaaacaaacaaaaaaaaaacttatgtagTACCAAGTGAATATTGTTCTAAATTCAAGAAGGAATGATGTATGTGCTTTGTAAAAACTTTGATGACAAAAGGCCTATGTTGTATGTGTTGGGTGTGAGCCTATGATGTGCAGTGATCTCCTGTTATACAGCTCAAATGGTCAACACTGTTTGTCCAACTGGAAAAACAAAGGGAAGGCTGAGTGTCTTTGAGTTCCTTATGGATAGATTGCCATAGTGCCATGTTGGGTACAAGGGAAATTTCCATTTGCAatctaatcttttttttcttagatGAATGATGCCCTCCTTCAGGAATGAACTTTTAGTGCCATGCcattgttgtttatttcacttgctTTAGTAGCAACATGTTTAAGCTGtgtacagtttttgttttcttctcaTGTCAAGCCTACATTTTAGAGCTGCAATTACAAACAAAATTCTGCATTACATCTTTGAGGGTGGTCTTAAAACACTGAATATCTCACAATGTCCTCTTGAGAtgcattgcattttttttcttctttttttttctttttgttttgctgcTGCTGAGAGTGACAATCCCTATGTCATGTTAGGTGCAAaatcatttcaaatatataaatatataatttttttagttttgataaTTTACACTGCACAAACTTTCTacaatgcttttgtaaacatttttagtgttatttgcaaaaaataaaaataaagttgaaattCTCATCACATGTCTGCTTTCCTCTTTGTTGTTGTGTGTAAATACAGATTTCAGAATTTTCAGACCAAGTAATTTCTTAAATGTATAAAGCTGtattttaggtttattttgtttcatattaattttactttttttttattctgaaccATGCATGTTCAAATTATgaatatgttttatagaattagtGAATAGTTATAAGTCTCAAGCTCAAGGCTCCATTCATTAGTCTGAAAAATGAAGTAAATCAGTAATCTATAATGTTAAACAGTAAACTATAGTAAAATCATTCCAATAAATTCTTAAGACTCACGGGACACTGAAGTCTAGAATGCTAAAAATTCATCAAATGAATAAGAATATTaattttgctttggcttagtcactGTTTCAgaggtcatcacagcagaatgaacctccaactatacgcagccgcaaaccagtactgagaaacactctaccctcattcacacacacttcatACTCCTACACTACGCCAgattagttttttcaattcaccttttgcacatctttggactgcggggaaaactggagcacccggaagaaaccatTCAAAGTACATACCATGCTccagaaaagaaatgtaaaacaagTATTTAACTTTGCTCATCCTCAGTTCTGAAATATTCAAGTAAGCTtttttattcataaggttttaactGAATCTGTGATCCTCTGTAATTAATGAAACGCTAAAAATGGCTACTGGCACCAAGGACCCagtttcagatttaaaaaaaatcttcttgaaTGTTCTACtgattttaataaaatgaaagacAGATAATATATGACCCtgcaccacaaaaccagtc

Function

symbol description
scarb2a Predicted to enable scavenger receptor activity. Acts upstream of or within notochord development. Predicted to be located in lysosome and membrane. Predicted to be integral component of membrane. Predicted to be active in cytoplasm and plasma membrane. Is expressed in several structures, including alar plate midbrain region; axial mesoderm; hindbrain neural plate; nervous system; and notochord. Human ortholog(s) of this gene implicated in progressive myoclonus epilepsy 4. Orthologous to human SCARB2 (scavenger receptor class B member 2).

GO:

id name namespace
GO:0030903 notochord development biological_process
GO:0005764 lysosome cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005044 scavenger receptor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-020419-29 Predicted to enable scavenger receptor activity. Acts upstream of or within notochord development. Predicted to be located in lysosome and membrane. Predicted to be integral component of membrane. Predicted to be active in cytoplasm and plasma membrane. Is expressed in several structures, including alar plate midbrain region; axial mesoderm; hindbrain neural plate; nervous system; and notochord. Human ortholog(s) of this gene implicated in progressive myoclonus epilepsy 4. Orthologous to human SCARB2 (scavenger receptor class B member 2).

Ensembl:

ensembl_id ENSDARG00000098312

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00059503 False 6254 mRNA 0.38 12 52844681 52862805
TCONS_00059502 True 6302 mRNA 0.38 13 52844681 52862805

Neighbor

gene id symbol gene type direction distance location
XLOC_030451 apba1a coding upstream 111112 52625975 ~ 52733569 (+)
XLOC_030450 ptar1 coding upstream 222727 52596850 ~ 52621954 (+)
XLOC_030449 BX957336.2 coding upstream 402189 52438392 ~ 52442492 (+)
XLOC_030448 FP016029.1 coding upstream 618876 52225684 ~ 52225805 (+)
XLOC_030447 slc14a2 coding upstream 666831 52167986 ~ 52177850 (+)
XLOC_030453 hint2 coding downstream 146278 53009083 ~ 53067934 (+)
XLOC_030454 NA coding downstream 325199 53188004 ~ 53191067 (+)
XLOC_030455 NA coding downstream 328857 53191662 ~ 53192805 (+)
XLOC_030456 BX323994.1 coding downstream 616771 53479576 ~ 53484789 (+)
XLOC_030457 taf6 coding downstream 718041 53580846 ~ 53765478 (+)
XLOC_030446 AL935198.1 non-coding upstream 787127 52055227 ~ 52057554 (+)
XLOC_030444 NA non-coding upstream 816950 52012883 ~ 52027731 (+)
XLOC_030440 CT033828.1 non-coding upstream 1033756 51810809 ~ 51810925 (+)
XLOC_030460 CR450749.2 non-coding downstream 1243205 54106010 ~ 54108514 (+)
XLOC_030464 NA non-coding downstream 1618954 54481759 ~ 54482867 (+)
XLOC_030470 NA non-coding downstream 1848218 54711023 ~ 54711655 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000080_01225510_01237270 SCARB2 coding CI01000080 null 1225510 ~ 1237468 (+)