RNA id: TCONS_00059527


Basic Information

Item Value
RNA id TCONS_00059527
length 2445
RNA type mRNA
GC content 0.53
exon number 4
gene id XLOC_030466
representative True

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 54501105 ~ 54542062 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGCCGGCCTGGAAACGCGAGATCCTTGAGCGGAGGAAGGCGAAGGGCGGCGGGTCCGGAGCAGGTGCCGAGTCCGTCGCATCTCGACTTAACGGCGAGGTAACGGGCAGCAAAAGCAAGGACGATGTTGCCAGCACATCTTCTAGCAGGAACTATTCCGTTACTGCTGCTAAGCGCTCGACCAAAAGCCCGGATCTATCGCCGGTAAAAACAAAAGAGCACTGGCCATCCGCGGAGCCGAGCGACTTGGAGGAGAGAACGGCAACAGACAACGGAGGAGCACAGGAGAGCCTCGTGCTGCAAGAGAGTTTGGGTCCGCTGCAGGAAAACCCATTCATTAAATTGGAGAAGGAACGCAAGAAGCGTCAGAGCCAAGAGATCTCCTCGCGACCCGTTCAGCACATCCTCGAGTTGTACGGTAGCGTTCCCGGGATACGGACTATACGCGCTGAAAACATCATCATTATTGAATCCGACCCGGAGTACTTTCCGGAAGGATGTGGCTTGAAGCATTCATCGAAACTGCAGCAGAACGGCACGGTGAGCGGATACAGCTCGCTCAATGACTTGTTAGATCGGAGAGGTAGTCCGGTTACGGAGATACGCGCAAAGGAAGTGGTCATTTACGACACTGCGCTTAGTAAAAGCGAGGAGAACCTCAGCACGCTGGTTTCCGCCCCGCTGGAGGGGCAGGGGAGGGTGAGTCGCATGCTACAGAAATTTGACAGAAATTATGGCAAGCTGCAGCCCAGGTCTCGTAGCACTGAAAACCTCCTAGACTTGGATCCTACCCCTGTCAGGCCAAACTCCAGACCTAAGCCAGATGTGGTGCCAAAATGTCCAGTGTCTCCGCAAGCCGGCTGCTCGCACAGCAAGGTCTTCCAAAACATCCAGTCTTCCTCAAGCAATCATCACACCTCTCCAAGTGACTCAGGGAGCAGTACACCTCTTTCTGGATCCCCTCAGTTAGTGTCTTCCGCACGCAGACGTTTTGAGGGGACTGGGGGACGAAGTGTCACTGTCCATCCTAAGGAAGACAGTGACAGGTCCCCATCCAAACCTGTTCGAGAACGGGATTGGGACAGCACAGATGGGGCCTCCAAAGCAAAGGTGCCATGCTCTCCGGAGAGCCACCGTTCCCGTGCCGACTGTACTTCAAGCCCTATGTCACCTCCCTTGTCACCCAGCTTTGAGATCCGTCCGTCTCCTCGGCCAGATCTTTCTCTCCTTCCAGCTGGTGATCTACAGGCCCGTGCTCTCGCCAACTTGCGTCTACAGTCTCGCAATTCTTTCACCGTCATTCCCAAAAGTCGCACAGCCATCTCTTCACCTGGCAGCACTGCTCCATCCAGCCCTGTTCTTTCCCCCTCATCCCCACGACCTTTGGTGGGTGTGGCAGCTTCAGAGCCAACAGTGCCAACCCCTTCACCTGCTTCTTTTACGCCGCCTCCATCAAAGCTTACAGAAAAGCTGACTGTAGAAGCCAAAGCAGGGTCTCCCCAACATACCCTACCCGCCATAACCCCCTCTCCAGTTTCTCAACCCTCAATTGACTTACCTGTTTCTTTAGACTCTCCTCTGGAGGACCCTCCAGTTGATAAGCTGCCTATCACAAACATTGATGACATAGTTGTGGAACCCACACCACCCATCCTGAGCCCTGCGATGCAGAGGCGCAAAGGGAATACATTTACAGTCGTCCCAAAACGGAGGCCTGAGGCTCAGTCTAGCCCTTCTGAGGCCCCAGAAGTTGTCACCGAATCTCCAAGCACGCCACAGGCCCCTTATGCTCATCTGGGTACCCTGATTAAAAAGCGTTACCCTGCTGCAGAAGAAATTGAGGTCATAGGGGGCTACCTGTCCCTTGGGCGATCCTGCCTCACAAAGACAGGCTCAACTGGAAAAAAGCTAAAAATATCCTTCAACGAGTCCAGTCTGCAAAGTACCTTTGAATACCCGGCTGAAAGCAGCGAGTGGGACAGCGGAGAGGACGAGGAGGAAGCTGAAGAAAAAGGAGGAGAAGATGATGGAGGGATCATTACAGGGAGGATAAGAATTCCGCGCGCCAGCTACACCAGCTCACCCACTCACTCCAGCAACTCCACGGATCTGTCCAGTTATACACCCAAACACTCAGTAGAGTTCAACGCCTGGCAAGAACACAAGCTTGAGTCTACTTCAGAAGATAATTCACAGCCTACGGAGGAGGTCATGCTCACACCCGCTGATAGCTCCTCTTTATCAGACTTCAGCAGTGAACCAGCCCTCTACTTCTAAACCTTCCAGATGTCTGGAAGAAACGGGACCAACCACTGCTTGGTAGCACCAACCTGGATGCAAAGCAACATCCTCCAGGACAATGGGAATAGTAGCAAGCAGCACTGCAAACATACATTCCATATATCTATGTCTGTACGCCATCAACGTCAACAGCAGAACTGTCCT

Function

GO:

id name namespace
GO:0019902 phosphatase binding molecular_function

KEGG:

id description
ko03400 DNA repair and recombination proteins

ZFIN:

id description
ZDB-GENE-081104-254 Predicted to enable phosphatase binding activity. Human ortholog(s) of this gene implicated in autosomal recessive nonsyndromic deafness 79. Orthologous to human TPRN (taperin).

Ensembl:

ensembl_id ENSDART00000165889

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00061463 lncRNA upstream 18238 54481781 ~ 54482867 (+) True XLOC_030464
TCONS_00061789 lncRNA upstream 18355 54481759 ~ 54482750 (+) False XLOC_030464
TCONS_00061788 lncRNA upstream 1308300 53191662 ~ 53192805 (+) True XLOC_030455
TCONS_00061462 lncRNA upstream 1310038 53188004 ~ 53191067 (+) True XLOC_030454
TCONS_00059496 lncRNA upstream 2058613 52438392 ~ 52442492 (+) True XLOC_030449
TCONS_00061790 lncRNA downstream 168961 54711023 ~ 54711655 (+) True XLOC_030470
TCONS_00061791 lncRNA downstream 523720 55065782 ~ 55074200 (+) False XLOC_030472
TCONS_00061792 lncRNA downstream 523726 55065788 ~ 55074200 (+) False XLOC_030472
TCONS_00061793 lncRNA downstream 525223 55067285 ~ 55074200 (+) True XLOC_030472
TCONS_00059534 lncRNA downstream 577448 55119510 ~ 55123220 (+) True XLOC_030473
TCONS_00059524 mRNA upstream 1988 54497478 ~ 54499117 (+) False XLOC_030465
TCONS_00059526 mRNA upstream 2055 54497730 ~ 54499050 (+) True XLOC_030465
TCONS_00059523 mRNA upstream 2061 54497475 ~ 54499044 (+) False XLOC_030465
TCONS_00059525 mRNA upstream 2070 54497486 ~ 54499035 (+) False XLOC_030465
TCONS_00059522 mRNA upstream 47257 54424613 ~ 54453848 (+) True XLOC_030463
TCONS_00059528 mRNA downstream 13505 54555567 ~ 54580564 (+) True XLOC_030467
TCONS_00059529 mRNA downstream 38900 54580962 ~ 54661956 (+) False XLOC_030468
TCONS_00059530 mRNA downstream 43369 54585431 ~ 54661956 (+) True XLOC_030468
TCONS_00059531 mRNA downstream 143113 54685175 ~ 54685710 (+) True XLOC_030469
TCONS_00059532 mRNA downstream 396572 54938634 ~ 54939544 (+) False XLOC_030471
TCONS_00059516 other upstream 392591 54106010 ~ 54108514 (+) True XLOC_030460
TCONS_00059514 other upstream 637871 53824969 ~ 53863234 (+) True XLOC_030458
TCONS_00059512 other upstream 743600 53700294 ~ 53757505 (+) True XLOC_030457
TCONS_00059510 other upstream 893402 53581489 ~ 53607703 (+) False XLOC_030457
TCONS_00059495 other upstream 2275300 52225684 ~ 52225805 (+) True XLOC_030448
TCONS_00059541 other downstream 1129404 55671466 ~ 55671582 (+) True XLOC_030479
TCONS_00059549 other downstream 1704674 56246736 ~ 56248735 (+) True XLOC_030488
TCONS_00059550 other downstream 1714126 56256188 ~ 56258166 (+) True XLOC_030489
TCONS_00059556 other downstream 1748073 56290135 ~ 56305811 (+) True XLOC_030492
TCONS_00059578 other downstream 3495710 58037772 ~ 58037886 (+) True XLOC_030510

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000059_00341223_00367666.mRNA True 2295 mRNA 0.55 2 CI01000059 341223 ~ 367864 (+)