RNA id: TCONS_00059529


Basic Information

Item Value
RNA id TCONS_00059529
length 3087
RNA type mRNA
GC content 0.46
exon number 22
gene id XLOC_030468
representative False

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 54580962 ~ 54661956 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ttagcccacacaattcacctgtaccacatgtttttggactgtggggcaaaccagaCAGAAAAAGGCAATATTACTGTCGCGGTGATGCTGCCCGAAAACCTGAAGTATTCTTGGGCATCGCCGCGCGTCCTCCCCGCTATCCGTATGGCGCAAGAGAAAATTCAGAAAAGCGGACTTTTAAGGGGACACACAATCAACCTTCTTAACTTTAGCACAGAGGATTCCTCAGGTTCTTGTTCGGAAAACGAGGCGCAAATTATCGCTGTGGACACAAAACTTTACCACAAACCAGATGCGTTCATCGGACCCGGCTGCACGTATTCGGTGGCGTCGGTCGGACGGTTCGCGTCCCACTGGAAACTCCCTTTGATAACCGCGGGAGGACCAGCGTATGGTTTTGATAAGTGGGAAGAGTTTAAAACTATTGTCAGGACGGGCCCGACCACCAAGAAACTCGGAGATTTTGTCAATTATCTGCACGGACAGTTTAACTGGAGCTCTCGCGCGTTAATGATCTTTCATGACCTCAAACAGGACGACCGGCCGCATTACTTTCTCTCCGAGGGCATTTACACGGTTCTGCGCGAGGAAAACATTACAGTGTTGGCTTTCCCTTATGAAGACGAACAAACTTATAATTATAAAGATATGATCACATTTATAAAGGACAACGGCAGAAttgtgtatatatgcgGCCCTCTACCGACGTTCTTCCAAATAATGAAGCTCTTTGAGGATGAAGTGAAGAGCCCAGAGGACTACGCCATCTTTTACCTTGACGTGTTTGCAGAGAGTTTAAGTGGTGATGTTCCAATGCCCTGGCAGGGTTCAGATATCCAGTGGAATGACCCCATCAAGCTATTTCAGTCTGTGTTCGTTGTAACATACCAGGAGCCAGACAGCCCTGAGTATACCGCTTTCCGCAAAGAACTCCACAAAAGAGCAATACAAGACTTTAATGTACAATTGGAACCCTCGATGATGGATTTTATTGCTGGCTGTTTCCATGATGGTTTTGTGCTATATGCAAAAGCCCTCAGTGAAGCGTTAGCAGACGGCGTGTCTCAGAACGATGGAATCAACATAACTGCGAGAATGCAAAACCGCAGGCTCTGGGGGGTGACGGGCCTTGTAAGCATAGATCAGAAAAATGCCAGATTCACGGACTTTAGCCTTTGGGCAATGACAAACCTGAAAAGTGGGCAATACGCAATTGTTGGTCACTACAATGGGACCAGTAAAGAAATCTTGTGGTCCCCAACAGAGAAGATTCAATGGCCAAAGGGTTGCCCACCTCTGGACTACCCACCCTGTGGATTCTCTCCGTGCAAGGAAGATCATCTTCCTGTTCTTGGAATAGTGGCTGTTGGGTCTGGTCTGGCCCTCATCATATTCGGAATTTCCAGTTTTCTAATCTACAGGAAACTGAAGCTGGAAAAAGAGTTAGCTGGGATGCTTTGGAGGATACGGTGGGAGGAACTCCAGTTTGAAAGTCCCAACAAATATCACAAGCGTGCAGGAAGCCGCCTCACTCTTTCTCAGAGAGGTTCCAGCTATGGCTCCTTGATAACAGCTCATGGAAAATATCAGCTATTTGCAAAAACAGGCTATTTTAAGggCAACCTGGTGGCCATCAAGCATGTGAACAAGAAGAGGATTGAGCTCACCAGACAAGTGTTGTTTGAATTGAAGCATATGAGAGATGTGCAGTTCAACCATTTGACAAGGTTTATTGGCGCTTGCATCGATCCACCAAACATCTGCATTGTGACAGAATATTGCCCCCGGGGAAGTCTACAGGACATCCTTGAAAATGAGAGCATCAACCTGGACTGGATGTTCCGATACTCACTGATCAATGACATTGTGAAGGGAATGAATTATCTACACAACAGTTACATTGGCTCCCATGGCAATCTGAAATCATCTAATTGTGTGGTGGATAGCCGCTTCGTTTTGAAAATCACAGATTATGGTCTGGCAAGCTTCCGTTCGTCTTGTGAAAATGAAGACTCACATGCGCTGTATGCAAaaaagctTTGGACAGCTCCAGAGTTGCTGATATATGATAGGCATCCACCCCAAGGGACCCAGAAAGGAGATGTGTACAGTTTTGGGATAATACTACAAGAGATAGCACTCCGGAACGGGCCGTTTTATGTTGAAGGAATGGATCTTAGTCCCAAAGagataaTTCAGAAGGTGCGGAATGGCCAGAAACCATACTTTAGGCCCACTACAGACAACAGCCGGCACTGTGAAGAGCTGACCATCTTAATGGAAGGCTGTTGGTCTGAAGATCCTGCAGAAAGACCCGACTTCAGCCATATTAAGGTCTTCATTGCAAAATTTAACAAGCAGCACCAGTATTCTCAATACTTGTTGTCCAGAATGGAACAGTATGCCAATAACCTGGAGAACTTGGTAGAGGAGCGAACACAAGCCTACCTCGAGGAAAAACGAAAAGCTGAAAATCTTCTTTACCAAATCCTTCCACATTCAGTGGCGGAGCAGCTCAAGCGAGGGGAGACCGTACAAGCAGAAGCATTTGACAGCGTCACCATCTATTTCAGTGACATAGTGGGCTTCACGTCAATGTCTGCTGAAAGTACGCCATTACAGGTGGTGACATTGCTGAATGATCTTTACACATGCTTTGATGCCATCATTGATAATTTTGATGTATATAAGGTGGAAACAATCGGTGATGCGTACATGGTGGTCTCAGGTCTGCCTGTGCGGAATGGGAAGCTACATGCACGTGAGATCGCCGGCATGTCACTGGCTTTACTGGAGCAGGTTAAAACCTTCAAAATCAGACAcagaccaaatgatcaactacgaCTGCGGATAGGAATTCACACAGGTACCATTATCattATTTCAAAATTTCTGATGAACTGTTTGTTTGTGATGGTCGTTTTCTCAACAGCTCTGAGGATACACATGTCCTCAGCAACCAAAGAGGTTCTGGATGAGTTTGGTTATTTCGAACTCCAGCTGCGAGGAGATGTGGAGATGAAGGGTAAAGGCAAAATGAGAACATATTGGCTTCTGGGAGAGAAGACAGATGTCTATGTTATCTGA

Function

GO:

id name namespace
GO:0035556 intracellular signal transduction biological_process
GO:0006468 protein phosphorylation biological_process
GO:0006182 cGMP biosynthetic process biological_process
GO:0009190 cyclic nucleotide biosynthetic process biological_process
GO:0060038 cardiac muscle cell proliferation biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005524 ATP binding molecular_function
GO:0016829 lyase activity molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0016849 phosphorus-oxygen lyase activity molecular_function
GO:0004672 protein kinase activity molecular_function
GO:0004383 guanylate cyclase activity molecular_function

KEGG:

id description
ko00230 Purine metabolism
ko04022 cGMP-PKG signaling pathway
ko04921 Oxytocin signaling pathway
ko04270 Vascular smooth muscle contraction
ko01001 Protein kinases

ZFIN:

id description
ZDB-GENE-141030-2 Predicted to enable guanylate cyclase activity; protein kinase activity; and purine ribonucleoside triphosphate binding activity. Acts upstream of or within cardiac muscle cell proliferation. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in several structures, including fin; head; kidney; neural tube; and oocyte. Human ortholog(s) of this gene implicated in Miura type epiphyseal chondrodysplasia; acromesomelic dysplasia, Maroteaux type; and essential hypertension. Orthologous to human NPR2 (natriuretic peptide receptor 2).

Ensembl:

ensembl_id ENSDART00000189371

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00061463 lncRNA upstream 98095 54481781 ~ 54482867 (+) True XLOC_030464
TCONS_00061789 lncRNA upstream 98212 54481759 ~ 54482750 (+) False XLOC_030464
TCONS_00061788 lncRNA upstream 1388157 53191662 ~ 53192805 (+) True XLOC_030455
TCONS_00061462 lncRNA upstream 1389895 53188004 ~ 53191067 (+) True XLOC_030454
TCONS_00059496 lncRNA upstream 2138470 52438392 ~ 52442492 (+) True XLOC_030449
TCONS_00061790 lncRNA downstream 49067 54711023 ~ 54711655 (+) True XLOC_030470
TCONS_00061791 lncRNA downstream 403826 55065782 ~ 55074200 (+) False XLOC_030472
TCONS_00061792 lncRNA downstream 403832 55065788 ~ 55074200 (+) False XLOC_030472
TCONS_00061793 lncRNA downstream 405329 55067285 ~ 55074200 (+) True XLOC_030472
TCONS_00059534 lncRNA downstream 457554 55119510 ~ 55123220 (+) True XLOC_030473
TCONS_00059528 mRNA upstream 398 54555567 ~ 54580564 (+) True XLOC_030467
TCONS_00059527 mRNA upstream 38900 54501105 ~ 54542062 (+) True XLOC_030466
TCONS_00059524 mRNA upstream 81845 54497478 ~ 54499117 (+) False XLOC_030465
TCONS_00059526 mRNA upstream 81912 54497730 ~ 54499050 (+) True XLOC_030465
TCONS_00059523 mRNA upstream 81918 54497475 ~ 54499044 (+) False XLOC_030465
TCONS_00059531 mRNA downstream 23219 54685175 ~ 54685710 (+) True XLOC_030469
TCONS_00059532 mRNA downstream 276678 54938634 ~ 54939544 (+) False XLOC_030471
TCONS_00059533 mRNA downstream 276697 54938653 ~ 54941004 (+) True XLOC_030471
TCONS_00059535 mRNA downstream 559637 55221593 ~ 55251994 (+) False XLOC_030476
TCONS_00059536 mRNA downstream 563541 55225497 ~ 55251430 (+) True XLOC_030476
TCONS_00059516 other upstream 472448 54106010 ~ 54108514 (+) True XLOC_030460
TCONS_00059514 other upstream 717728 53824969 ~ 53863234 (+) True XLOC_030458
TCONS_00059512 other upstream 823457 53700294 ~ 53757505 (+) True XLOC_030457
TCONS_00059510 other upstream 973259 53581489 ~ 53607703 (+) False XLOC_030457
TCONS_00059495 other upstream 2355157 52225684 ~ 52225805 (+) True XLOC_030448
TCONS_00059541 other downstream 1009510 55671466 ~ 55671582 (+) True XLOC_030479
TCONS_00059549 other downstream 1584780 56246736 ~ 56248735 (+) True XLOC_030488
TCONS_00059550 other downstream 1594232 56256188 ~ 56258166 (+) True XLOC_030489
TCONS_00059556 other downstream 1628179 56290135 ~ 56305811 (+) True XLOC_030492
TCONS_00059578 other downstream 3375816 58037772 ~ 58037886 (+) True XLOC_030510

Expression Profile

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