RNA id: TCONS_00059536


Basic Information

Item Value
RNA id TCONS_00059536
length 2301
RNA type mRNA
GC content 0.46
exon number 17
gene id XLOC_030476
representative True

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 55221593 ~ 55251994 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GAAGAGGATGAGTCCATGTCTGAAGGAGAAATGGCCAAACTCATGGAGGAGGTGGAGGAAAAGAAGAAATTAATAGCAAACATCAGGAACAAGCCCTGGCGAATGAGAAGACGACTTAAAGTCCTCAAAGAGGCTCAGCAGTTTGTGGATAAATTTGAAGGTGCTTTGGGCAAAGGGAAAGGCAGAAAGCTGTATGCCTACAAAGTTATGATGATGAAGAAATGGATAAAGTTTAAAAGGGATTTTGAAAATTTTAGAACGGCTTGCATCCCATGGGAGCGGAAAATAAAGGAAGTTGAGAGTCACTTTGGCTCCTCTGTTGCTTCATACTTTATTTTCCTCCGTTGGATGTATGGCATGAACTTGGTCCTCTTCAGCTTAACTTTTGGCCTGGTTGTGATACCAGAGGTTCTCATGGGACTTCCATATGGGTCCATTCCTCGGAAAACTGTGCCGAGAGAAGACCAAGATACTGCAATGGACTATTCTGTTCTTACGGATTTCAATGGTTACTGCAAGTACTCAGTACTTTtctatggctactataataacCAGAGAACCATTGGCTTCCTGAAGTTTCGTCTCCCTCTGTCCTACCTCATGGTGGGCATTGGGACCTTCGGGTATAGCCTCATGGTTGTGATCAGAACGATGGCTAAAAACGCAGATGTGGGGGGAGGGGACGGAGAAGACAATGAGTTCACCTTTGCCTGGAAGATGTTCACCAGCTGGGATTATCTTATTGGGAACGCTGAGACAGCTGACAATAAATACGCCTCCATCACCACCAGCTTCAAAGAATCCATTGTGGATGAGCAGGAGAACCAAAAGGATGAAAACATTCATCTGAGAAGATTCTTACGTGTCCTAGCCAACTTTCTCATCACCTGTACATTGGGTGGAAGTGGCTATCTCATCTATTTTGTAGTCAAACGCTCTCAAGAGTTTCAAAACATGGACAACCTCTCATGGTATGAGAAGAATGAGcttgagaTCATCATGTCTCTGTTGGGACTGGTGGGTCCAATGCTCTTTGAGACCATCGCAGAGTTGGAGGAGTACCATCCACGTATCGCTCTCAAGTGGCAACTTGGAcgtatatttgcactctttcttGGCAATCTCTACACATTTTTGCTGGCTCTGTTTGATGAGGTCAAtgcaaaaCTTGAAGAAGAGGAGTCTATAAAAAATGCCAGCATTTGGTTCTTGAAGGAGTACTATGCCAACTACACAGCCAACAACCCAAATGACACAGGCACTCCACCTCCTATCAACCCAGCGGATGCCATCAGAGGCCCATGCTGGGAAACCACAGTGGGAGTAGAGTTTGTGAAGCTGACTATATCAGATATACAGGTGACATATCTGACCATCCTCATCGGTGATTTCTTGAGAGCGTTCATTGTACGTTTCCTGAACTATTGCTGGTGCTGGGATCTGGAAGCCGGATGGCCTTCCTATGGTGAATTTGACATAAGCGGCAATGTGCTTGGTTTGGTATTTAACCAAGGAATGATCTGGATGGGGGCATTCTATGCTCCCGGTCTTGTAGGCATCAATGTTCTGCGGCTCCTTTCATCTATGTACTATCAATGCTGGGCTGTAATGGCCTGTAATGTCCCACATGAGAGGGTCTTTAAAGCTTCTAAATCCAATAACTTCTACATGGGCCTGTTATTGCTCATCCTCTTTCTGAGTCTCCTACCTGTGGTTTACACCATTATGTCTTTGCCACCATCTTTTGATTGTGGACCTTTCAGTGGAAAGGAAAGAATGTTCGACGTTGTTATGGAGACCATTGATCTGGATCTACCAGCATTTATGGGGACTCTCTTTGGATATGTCGCAAACCCGGGACTCGTTATATCTGCAGTACTTCTCATGGTacTGGCCATTTACTACCTGAATTCTGTGTCAGAGGCCTACAAGAACTCCAACAATGagctaaaaaagaaaatgcagaTGGCAAGAGATGAGGAGAAGAACAGACGGAACAACAAAGACAGCACTAACCAAGTGATGAAAGACCTAGAGGATCTGCTTCCCAATCGCCCTCCAACGCCTCCTTCTCCTCGAGAGAATATCGCAGAAAAAAACCAGGGCCAGGGTGGAAAATCTGCAAAAGTTAAACCAGGCACAGCTGGCGGTGTGCATCTGCAGAAAGATGTGTCACTCGCATCAGCCAATCCTAATGCACGGGGGCCTGTGACACGAGCGCCAGGCCCCAGGGGTCCTGGACCTCTACCTGGCCAACCAGGGGCAGGTAGGGGTCAAGGTCCACCCCCTAGACGGCAGTGA

Function

GO:

id name namespace
GO:0050910 detection of mechanical stimulus involved in sensory perception of sound biological_process
GO:0060005 vestibular reflex biological_process
GO:0005887 integral component of plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0008381 mechanosensitive ion channel activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060526-280 Predicted to enable mechanosensitive ion channel activity. Acts upstream of or within detection of mechanical stimulus involved in sensory perception of sound. Predicted to be located in membrane. Predicted to be integral component of plasma membrane. Is expressed in inner ear and neuromast. Orthologous to human TMC2 (transmembrane channel like 2).

Ensembl:

ensembl_id ENSDART00000144087

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00061466 lncRNA upstream 71248 55146633 ~ 55154249 (+) False XLOC_030475
TCONS_00061465 lncRNA upstream 71248 55146633 ~ 55154249 (+) True XLOC_030475
TCONS_00061464 lncRNA upstream 85360 55134605 ~ 55140137 (+) True XLOC_030474
TCONS_00059534 lncRNA upstream 102277 55119510 ~ 55123220 (+) True XLOC_030473
TCONS_00061793 lncRNA upstream 151297 55067285 ~ 55074200 (+) True XLOC_030472
TCONS_00061794 lncRNA downstream 466295 55717725 ~ 55719138 (+) True XLOC_030480
TCONS_00061467 lncRNA downstream 653703 55905133 ~ 55906710 (+) False XLOC_030481
TCONS_00061468 lncRNA downstream 653728 55905158 ~ 55906710 (+) False XLOC_030481
TCONS_00061469 lncRNA downstream 653757 55905187 ~ 55906713 (+) False XLOC_030481
TCONS_00061470 lncRNA downstream 654145 55905575 ~ 55906491 (+) True XLOC_030481
TCONS_00059533 mRNA upstream 284493 54938653 ~ 54941004 (+) True XLOC_030471
TCONS_00059532 mRNA upstream 285953 54938634 ~ 54939544 (+) False XLOC_030471
TCONS_00059531 mRNA upstream 539787 54685175 ~ 54685710 (+) True XLOC_030469
TCONS_00059529 mRNA upstream 563541 54580962 ~ 54661956 (+) False XLOC_030468
TCONS_00059537 mRNA downstream 13844 55265274 ~ 55316951 (+) False XLOC_030477
TCONS_00059538 mRNA downstream 14120 55265550 ~ 55349429 (+) True XLOC_030477
TCONS_00059539 mRNA downstream 375263 55626693 ~ 55689609 (+) False XLOC_030478
TCONS_00059540 mRNA downstream 375263 55626693 ~ 55689656 (+) True XLOC_030478
TCONS_00059542 mRNA downstream 682699 55934129 ~ 55952128 (+) False XLOC_030482
TCONS_00059516 other upstream 1116983 54106010 ~ 54108514 (+) True XLOC_030460
TCONS_00059514 other upstream 1362263 53824969 ~ 53863234 (+) True XLOC_030458
TCONS_00059512 other upstream 1467992 53700294 ~ 53757505 (+) True XLOC_030457
TCONS_00059510 other upstream 1617794 53581489 ~ 53607703 (+) False XLOC_030457
TCONS_00059495 other upstream 2999692 52225684 ~ 52225805 (+) True XLOC_030448
TCONS_00059541 other downstream 420036 55671466 ~ 55671582 (+) True XLOC_030479
TCONS_00059549 other downstream 995306 56246736 ~ 56248735 (+) True XLOC_030488
TCONS_00059550 other downstream 1004758 56256188 ~ 56258166 (+) True XLOC_030489
TCONS_00059556 other downstream 1038705 56290135 ~ 56305811 (+) True XLOC_030492
TCONS_00059578 other downstream 2786342 58037772 ~ 58037886 (+) True XLOC_030510

Expression Profile

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