RNA id: TCONS_00059535


Basic Information

Item Value
RNA id TCONS_00059535
length 3386
RNA type mRNA
GC content 0.43
exon number 20
gene id XLOC_030476
representative False

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 55221593 ~ 55251994 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GCAGTAATCTGTTAGACCACAGGAGCAAGGGAAGAAATTCTGAGACTAACAAAGATCAGAAGGGCAGCAAAATGCCAAAGAAAAGTGATACAACAAGAAAACTGGAAGATGtgggaATAGAAATTGATGGGGATGTGGACAGTGCTGAAGAGGACAAGAAATCCAAAGGCAAGGGTGGTAAAAAAGCAGCAGGCGGTAAGCGAGGTAAAGCCAGTGAGGATGGtgaggatgaagatgaggatgataAACCCCCCAAAGGTCGTCGGGCAGCCAATAAAAAGAAACCAGCACCAGTAGATGAGGAAGACAGTGATGATGATATTCCACAAAGGAGATCTGCTGGGAACAGGAGACGAGGAAATGTGCGAGAGAGAGGAGATGGAGACAAAAAGAAGTCTGGCAAAAAAGGCAGGAGAGGtggaaaaaagaatgaaaaagggAAAGGAAAAGACAGTGACAAAGACAGTGACAAAgatgaaaagaagaaaaagaacagTAGTGGTGATGAATCCGATTCAGATGAAGAGGATGAGTCCATGTCTGAAGGAGAAATGGCCAAACTCATGGAGGAGGTGGAGGAAAAGAAGAAATTAATAGCAAACATCAGGAACAAGCCCTGGCGAATGAGAAGACGACTTAAAGTCCTCAAAGAGGCTCAGCAGTTTGTGGATAAATTTGAAGGTGCTTTGGGCAAAGGGAAAGGCAGAAAGCTGTATGCCTACAAAGTTATGATGATGAAGAAATGGATAAAGTTTAAAAGGGATTTTGAAAATTTTAGAACGGCTTGCATCCCATGGGAGCGGAAAATAAAGGAAGTTGAGAGTCACTTTGGCTCCTCTGTTGCTTCATACTTTATTTTCCTCCGTTGGATGTATGGCATGAACTTGGTCCTCTTCAGCTTAACTTTTGGCCTGGTTGTGATACCAGAGGTTCTCATGGGACTTCCATATGGGTCCATTCCTCGGAAAACTGTGCCGAGAGAAGACCAAGATACTGCAATGGACTATTCTGTTCTTACGGATTTCAATGGTTACTGCAAGTACTCAGTACTTTtctatggctactataataacCAGAGAACCATTGGCTTCCTGAAGTTTCGTCTCCCTCTGTCCTACCTCATGGTGGGCATTGGGACCTTCGGGTATAGCCTCATGGTTGTGATCAGAACGATGGCTAAAAACGCAGATGTGGGGGGAGGGGACGGAGAAGACAATGAGTTCACCTTTGCCTGGAAGATGTTCACCAGCTGGGATTATCTTATTGGGAACGCTGAGACAGCTGACAATAAATACGCCTCCATCACCACCAGCTTCAAAGAATCCATTGTGGATGAGCAGGAGAACCAAAAGGATGAAAACATTCATCTGAGAAGATTCTTACGTGTCCTAGCCAACTTTCTCATCACCTGTACATTGGGTGGAAGTGGCTATCTCATCTATTTTGTAGTCAAACGCTCTCAAGAGTTTCAAAACATGGACAACCTCTCATGGTATGAGAAGAATGAGcttgagaTCATCATGTCTCTGTTGGGACTGGTGGGTCCAATGCTCTTTGAGACCATCGCAGAGTTGGAGGAGTACCATCCACGTATCGCTCTCAAGTGGCAACTTGGAcgtatatttgcactctttcttGGCAATCTCTACACATTTTTGCTGGCTCTGTTTGATGAGGTCAAtgcaaaaCTTGAAGAAGAGGAGTCTATAAAAAATGCCAGCATTTGGTTCTTGAAGGAGTACTATGCCAACTACACAGCCAACAACCCAAATGACACAGGCACTCCACCTCCTATCAACCCAGCGGATGCCATCAGAGGCCCATGCTGGGAAACCACAGTGGGAGTAGAGTTTGTGAAGCTGACTATATCAGATATACAGGTGACATATCTGACCATCCTCATCGGTGATTTCTTGAGAGCGTTCATTGTACGTTTCCTGAACTATTGCTGGTGCTGGGATCTGGAAGCCGGATGGCCTTCCTATGGTGAATTTGACATAAGCGGCAATGTGCTTGGTTTGGTATTTAACCAAGGAATGATCTGGATGGGGGCATTCTATGCTCCCGGTCTTGTAGGCATCAATGTTCTGCGGCTCCTTTCATCTATGTACTATCAATGCTGGGCTGTAATGGCCTGTAATGTCCCACATGAGAGGGTCTTTAAAGCTTCTAAATCCAATAACTTCTACATGGGCCTGTTATTGCTCATCCTCTTTCTGAGTCTCCTACCTGTGGTTTACACCATTATGTCTTTGCCACCATCTTTTGATTGTGGACCTTTCAGTGGAAAGGAAAGAATGTTCGACGTTGTTATGGAGACCATTGATCTGGATCTACCAGCATTTATGGGGACTCTCTTTGGATATGTCGCAAACCCGGGACTCGTTATATCTGCAGTACTTCTCATGGTacTGGCCATTTACTACCTGAATTCTGTGTCAGAGGCCTACAAGAACTCCAACAATGagctaaaaaagaaaatgcagaTGGCAAGAGATGAGGAGAAGAACAGACGGAACAACAAAGACAGCACTAACCAAGTGATGAAAGACCTAGAGGATCTGCTTCCCAATCGCCCTCCAACGCCTCCTTCTCCTCGAGAGAATATCGCAGAAAAAAACCAGGGCCAGGGTGGAAAATCTGCAAAAGTTAAACCAGGCACAGCTGGCGGTGTGCATCTGCAGAAAGATGTGTCACTCGCATCAGCCAATCCTAATGCACGGGGGCCTGTGACACGAGCGCCAGGCCCCAGGGGTCCTGGACCTCTACCTGGCCAACCAGGGGCAGGTAGGGGTCAAGGTCCACCCCCTAGACGGCAGTGATGTGTGATATTATTTGTTGTATCCTGTTTGTctgtacacaatttttttttctagagaaagtaatatttaaaatgatttaatacatGCTGTTAAACACCTCAGAAAAACGTAAACAATTTATATCACACTTTcgtaacactttattttcatggACCATTTGAGTgttattagactgtctgcttaatatctgttgactctgctcctttaacagacatttacctgactagaagaaactttgcaggtacatgtcaatttacagtaCACTAAACCTAATTCTGACTCCTAACCCAACCAGCAGTCTACTTATAAACTAATGAGAATTAGTCggcatgtagatgtaatgtaacttaattcaacaaatgaaccatcaaaataaagtgtgacctacaCTTTTCCTACTGTAAATTGAATATCACATACATACGGTAGCCCCAAAAAAAATTTGGACCCTCAGTCctatataaaaatgtttgaatttaattgcattagaTATTGACTAAAACATTAATTGACATCCTTTCTCAAAAAGTCTCATCTTTAACTTTACTGAGCAATTTTGCAGTG

Function

GO:

id name namespace
GO:0050910 detection of mechanical stimulus involved in sensory perception of sound biological_process
GO:0060005 vestibular reflex biological_process
GO:0005887 integral component of plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0008381 mechanosensitive ion channel activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060526-280 Predicted to enable mechanosensitive ion channel activity. Acts upstream of or within detection of mechanical stimulus involved in sensory perception of sound. Predicted to be located in membrane. Predicted to be integral component of plasma membrane. Is expressed in inner ear and neuromast. Orthologous to human TMC2 (transmembrane channel like 2).

Ensembl:

ensembl_id ENSDART00000073638

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00061466 lncRNA upstream 67344 55146633 ~ 55154249 (+) False XLOC_030475
TCONS_00061465 lncRNA upstream 67344 55146633 ~ 55154249 (+) True XLOC_030475
TCONS_00061464 lncRNA upstream 81456 55134605 ~ 55140137 (+) True XLOC_030474
TCONS_00059534 lncRNA upstream 98373 55119510 ~ 55123220 (+) True XLOC_030473
TCONS_00061791 lncRNA upstream 147393 55065782 ~ 55074200 (+) False XLOC_030472
TCONS_00061794 lncRNA downstream 465731 55717725 ~ 55719138 (+) True XLOC_030480
TCONS_00061467 lncRNA downstream 653139 55905133 ~ 55906710 (+) False XLOC_030481
TCONS_00061468 lncRNA downstream 653164 55905158 ~ 55906710 (+) False XLOC_030481
TCONS_00061469 lncRNA downstream 653193 55905187 ~ 55906713 (+) False XLOC_030481
TCONS_00061470 lncRNA downstream 653581 55905575 ~ 55906491 (+) True XLOC_030481
TCONS_00059533 mRNA upstream 280589 54938653 ~ 54941004 (+) True XLOC_030471
TCONS_00059532 mRNA upstream 282049 54938634 ~ 54939544 (+) False XLOC_030471
TCONS_00059531 mRNA upstream 535883 54685175 ~ 54685710 (+) True XLOC_030469
TCONS_00059529 mRNA upstream 559637 54580962 ~ 54661956 (+) False XLOC_030468
TCONS_00059530 mRNA upstream 559637 54585431 ~ 54661956 (+) True XLOC_030468
TCONS_00059537 mRNA downstream 13280 55265274 ~ 55316951 (+) False XLOC_030477
TCONS_00059538 mRNA downstream 13556 55265550 ~ 55349429 (+) True XLOC_030477
TCONS_00059539 mRNA downstream 374699 55626693 ~ 55689609 (+) False XLOC_030478
TCONS_00059540 mRNA downstream 374699 55626693 ~ 55689656 (+) True XLOC_030478
TCONS_00059542 mRNA downstream 682135 55934129 ~ 55952128 (+) False XLOC_030482
TCONS_00059516 other upstream 1113079 54106010 ~ 54108514 (+) True XLOC_030460
TCONS_00059514 other upstream 1358359 53824969 ~ 53863234 (+) True XLOC_030458
TCONS_00059512 other upstream 1464088 53700294 ~ 53757505 (+) True XLOC_030457
TCONS_00059510 other upstream 1613890 53581489 ~ 53607703 (+) False XLOC_030457
TCONS_00059495 other upstream 2995788 52225684 ~ 52225805 (+) True XLOC_030448
TCONS_00059541 other downstream 419472 55671466 ~ 55671582 (+) True XLOC_030479
TCONS_00059549 other downstream 994742 56246736 ~ 56248735 (+) True XLOC_030488
TCONS_00059550 other downstream 1004194 56256188 ~ 56258166 (+) True XLOC_030489
TCONS_00059556 other downstream 1038141 56290135 ~ 56305811 (+) True XLOC_030492
TCONS_00059578 other downstream 2785778 58037772 ~ 58037886 (+) True XLOC_030510

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000059_00892927_00916862.mRNA True 3657 mRNA 0.43 17 CI01000059 892927 ~ 918225 (+)