RNA id: TCONS_00059511


Basic Information

Item Value
RNA id TCONS_00059511
length 2463
RNA type mRNA
GC content 0.42
exon number 13
gene id XLOC_030457
representative False

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 53580846 ~ 53765478 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GATGCATTGAAGTTTATGCACCATGGGAAAAGATGCAAACTTACAACTGGTGACATTGATCATGCCCTTAAACTGAAAAATGTGGAGCCACTGTATGGATTCCAGTCCGAGGAGTTCATCCCATTTCGCTTTGCAAGTGGAGGTGGCAGAGAATTGCACTTTTATGAAGAAAAAGAAGTGGATCTTAGTGACATCATTAATACACCCTTGCCTCGTGTACCTTTAGACGTTTCACTAAAAGCTCACTGGCTAAGTATAGATGGTGTCCAGCCTGCAATTCCAGAGAACCCACCTTCTGcTTCTAAAGAGCAGCAGAAGGCAGAGTCTACTGAGCCGCTTAAAGCTGTCAAACCTGGACAGGAAGACGAAGGCTTTATTCAAGCCAAGGGTCAGAGTGCAGTTTCTGCTGAAGTCAAAGGAAAGGAAAAGATGCGGATGAAACCACGTAGCACACATGAGCTCTCTGTGGAGCAGCAGTTGTACTATAAAGAAATTACTGAAGCCTGTGTGGGATCCTGTGAAGCCAAAAGAGCGGAGGCACTGCAGAGCATAGCCACCGACCCAGGGCTGTACCAAATGCTGCCAAGGTTCAGTACCTTCATCTCGGAGGGTGTGCGTGTAAATGTTGTTCAGAATAACTTGGCTTTGCTGATATATTTGATGAGGATGGTGAAGGCTCTAATGGACAATCCAACTCTATATTTGGAGAAATATCTCCATGAGTTGATCCCCGCGGTGGTGACATGTATTGTGAGTAAGCAACTGTGTTTGAGGCCTGATGTAGACAATCACTGGGCTCTGCGAGACTTTGCTGCCCGGTTAATGGCTCAGAGCTGCAAAACATTCAGCACCACAACCAACAACATCCAGTCGCGTATCACCAAAACCTTTACTAAGGCATTGTTGGATGAAAAGACTCAGTGGACAACTCGTTATGGCTGCATTGCTGGACTTGCTGAACTTGGGCATGATGTGATAAAGACTTTGATCATCCCCCGACTGTTTGTAGAGGGTGCCCGTATTAAAGCAGTGATGGATGGGCCAGTGGTATCCAATATTGATAAGATTGGAGCTGATCATGTCCAGAGTCTATTACTGAAACATTGTGCAAGTGTGGTTGCTAAAACTAGGCCGGTCCCAGATCTGGTGGAGCAATACAAAGCAGATTATGGTTATCTGGGCACTATGCTATGTTCACATGTGGTGAAGGCCCGTGCACAGGCTGCCTTTCAGGCCCAAACTGTTAACAGAACCACACTTACTATCACACAGCCACGTCCGACTTTGACAATGTCTCAGAGTGGATTGTCAACATCAGGTGTTTCACGTACACCCAGCATAATTAAAGTACCCAGTTCACTTACCCTCATGTCTACTCGACCTGGAACACCCACTCAGCCATCACCCCCAGCAACAAAGTATATTGTTATGGCAACAAGTGCAGGGGCTGCATCCACACAGCAGGTAATCACTCTCAGCTCCTCTCAGTCTGGATCCCCTGTCACAAGTACAGTCCCCAGCACACCAACAAGTCTACAGCCACTCGTCAAACTGGAGTCTGGAAATCCAGGTGCTGTGGGCAGCTCACGCCCAATCCAGAAATATATTGTGGTGTCTTTGCCTTCATCCTCTTCATCAATGGATAATAAGGGCTCAGGTGTCCTTTCCTCTTCTACCTCACCTATCAGCATGGAGTCTGCAGTCAAGCTGGAATGTTCAGAATCACCAGCCACAAGCACACAATTGCCACATTGACACTCTCACTCTTGCTTACGCCATCAGGGTATAGATCAACAATAAATGTAACTTGATGCTTATCAAAGTgctttaaaacaaacatacacacagatacacaaataCATGTCACAGACACACAATACAGTTGTGGCTGCAAGCACATCGAGGCTGTAACAATGACATCTATACATACAAACATGTTAAGGAACCTTTATTGTGATTTGAGATGAAAGCACAAGACTTGGTTCTGCCTTTGAGCTCCTAGCTTTAGCTGTAGTTTAGCTGTATTTCATGTACATGAGGATATATATGCAGATAACAGGAGAAAGAATGATAAATGTGGATTCTCTGGGTAGGAATTAATGGGTCCACCATTAATACAATGTTTTTTATAGTTGGGCATTTGTTGGgtttaacaatttaattgatttacagtTTCAAGTTTATTATTATCTTCTATAATAAAGTTGGTTTTTAAGGTGTGATTTACATTTCTTAATTTGTAATACTTAATGTTATAATGTTTTTTgtagaaatcagtgttttttttttgttttcatgtcaaACGTTTTGTTATATCAGTTCAATTTCTTTTCTCAAGATAAAACTTAAGATATTAAGTATAATAGTACACTGAAGGTATTAGCAATTATTAAGTAATCCATTCTTAAATACAGTTTTGTATAATTGTGaggaaaaatgtcaataaaaaggcatggaacaaca

Function

GO:

id name namespace
GO:0006352 DNA-templated transcription, initiation biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0006367 transcription initiation from RNA polymerase II promoter biological_process
GO:0016573 histone acetylation biological_process
GO:0045944 positive regulation of transcription by RNA polymerase II biological_process
GO:0000124 SAGA complex cellular_component
GO:0005634 nucleus cellular_component
GO:0046695 SLIK (SAGA-like) complex cellular_component
GO:0005669 transcription factor TFIID complex cellular_component
GO:0003713 transcription coactivator activity molecular_function
GO:0016251 RNA polymerase II general transcription initiation factor activity molecular_function
GO:0046982 protein heterodimerization activity molecular_function

KEGG:

id description
ko03022 Basal transcription factors
ko03021 Transcription machinery
ko03036 Chromosome and associated proteins

ZFIN:

id description
ZDB-GENE-040912-23 Predicted to enable transcription coactivator activity. Predicted to contribute to RNA polymerase II general transcription initiation factor activity. Predicted to be involved in RNA polymerase II preinitiation complex assembly. Predicted to act upstream of or within transcription initiation from RNA polymerase II promoter. Predicted to be part of transcription factor TFIID complex. Orthologous to human TAF6 (TATA-box binding protein associated factor 6).

Ensembl:

ensembl_id ENSDART00000163256

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00061788 lncRNA upstream 498998 53191662 ~ 53192805 (+) True XLOC_030455
TCONS_00061462 lncRNA upstream 500736 53188004 ~ 53191067 (+) True XLOC_030454
TCONS_00059496 lncRNA upstream 1249311 52438392 ~ 52442492 (+) True XLOC_030449
TCONS_00061787 lncRNA upstream 1664072 52015419 ~ 52027731 (+) True XLOC_030444
TCONS_00059487 lncRNA upstream 1675912 52014665 ~ 52015891 (+) False XLOC_030444
TCONS_00061789 lncRNA downstream 719813 54481759 ~ 54482750 (+) False XLOC_030464
TCONS_00061463 lncRNA downstream 719835 54481781 ~ 54482867 (+) True XLOC_030464
TCONS_00061790 lncRNA downstream 949077 54711023 ~ 54711655 (+) True XLOC_030470
TCONS_00061791 lncRNA downstream 1303836 55065782 ~ 55074200 (+) False XLOC_030472
TCONS_00061792 lncRNA downstream 1303842 55065788 ~ 55074200 (+) False XLOC_030472
TCONS_00059506 mRNA upstream 207014 53479576 ~ 53484789 (+) False XLOC_030456
TCONS_00059505 mRNA upstream 207014 53479576 ~ 53484789 (+) False XLOC_030456
TCONS_00059507 mRNA upstream 207014 53482597 ~ 53484789 (+) True XLOC_030456
TCONS_00059504 mRNA upstream 623869 53009083 ~ 53067934 (+) True XLOC_030453
TCONS_00059502 mRNA upstream 828998 52844681 ~ 52862805 (+) True XLOC_030452
TCONS_00059513 mRNA downstream 63013 53824959 ~ 53865456 (+) False XLOC_030458
TCONS_00059515 mRNA downstream 114223 53876169 ~ 53908674 (+) True XLOC_030459
TCONS_00059517 mRNA downstream 518189 54280135 ~ 54294086 (+) False XLOC_030461
TCONS_00059518 mRNA downstream 518241 54280187 ~ 54294086 (+) True XLOC_030461
TCONS_00059519 mRNA downstream 639025 54400971 ~ 54415064 (+) True XLOC_030462
TCONS_00059510 other upstream 84100 53581489 ~ 53607703 (+) False XLOC_030457
TCONS_00059495 other upstream 1465998 52225684 ~ 52225805 (+) True XLOC_030448
TCONS_00059489 other upstream 1634249 52055227 ~ 52057554 (+) False XLOC_030446
TCONS_00059491 other upstream 1634624 52055730 ~ 52057179 (+) True XLOC_030446
TCONS_00059490 other upstream 1634728 52055254 ~ 52057075 (+) False XLOC_030446
TCONS_00059514 other downstream 63023 53824969 ~ 53863234 (+) True XLOC_030458
TCONS_00059516 other downstream 344064 54106010 ~ 54108514 (+) True XLOC_030460
TCONS_00059541 other downstream 1909520 55671466 ~ 55671582 (+) True XLOC_030479
TCONS_00059549 other downstream 2484790 56246736 ~ 56248735 (+) True XLOC_030488
TCONS_00059550 other downstream 2494242 56256188 ~ 56258166 (+) True XLOC_030489

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
bowfin (Amia calva) AMCG00014817 True 1653 mRNA 0.61 12 CM030128.1 32653743 ~ 32663154 (+)