XLOC_030493


Basic Information

Item Value
gene id XLOC_030493
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 56433652 ~ 56438669 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00061796
TCTGAATTCCACTTCCTGTGAGGGTGTGCCGGCAATGGCTCCAGCCTGCCTGGTTTGTGTACATGTTTCTATCAGTGTTTTGACTGATTGGATGTCTGACTGACCCACTGTCAGTTTCAGCGCGGTTGGAGACTTTATATCAATCAGCGGATTTGGTATAAGAGCACTTCCATTCTTGTTTGTGGTGCCAAAAGGAGCATTCAAGCACTACCGAGAGAACTTTTCTGCTGACTGTGAGAGGAACTTGTACTTGACCTCTTTGCCACATTTCCAAGCCAGTGAAGATGCTTTTTGATTGCTCTGGCACGCTCAGTGAAGAGGAAAATCCACAATGCGAAGACAGGAGAAGAGATCGACAGAGTCCAGAGGCTTTTAGATCAATGCTTTCCCCTGGAGAACTGCTGACTTTTCCCATTTTACAGCATTAAGCATGGACCTTGTTCATGATAAAACTGCCAGTGATTTCATTGTTGGGGAAAGCGAGGGTTTACTTACAGAGTAAATGCAGTATGGAAAGCAAAAAGGTGAATTTCTCAATGTCTGTGTCACTATTATCAGGTTCTGTGTGACTATAAAGATtaagttcaattcaattatttttcAAGTTTGACTATTTATTGCCTAAGTGGAATAAACTAATTCATTGCCTAAGTGTCATGAATTCATATTTGTCCTTTTCCCCTGCTCACTAGAGGAGGTGAAAATAACTGATCAGCTGAAGTACGTCTTGTTTGAAGTGACAGGAGGACCTAAGGGAAAACACCCTCATCTTCCACTTCACTAGATGTAGGGCAGAACACTCAGGTTGCATCTCATTTACATTTGACAGCTCACCCCGATCTTATGGTTGCCCACAACCATCCTTTGAAAAAGATAACTAGGATAACCATCATTTAACTTGGACACCTCAATTGGGTGAGATTAGGACATCTTTTAAAAGTATAATTATATAAATCTTGTATCGGTTTTTCAATTCTTTTCTAGGTATAATGCCTTTTCTTTTGTAGTAACTAGAGATTTTTCTGCCATGTCAATGGTTCATTGCTTAATGGTTCATTGATTAATCTCAGGTATATCCAAC

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00061796 True 1081 lncRNA 0.40 3 56433652 56438669

Neighbor

gene id symbol gene type direction distance location
XLOC_030492 aatf coding upstream 127571 56277866 ~ 56306081 (+)
XLOC_030491 lhx1b coding upstream 159478 56268436 ~ 56274174 (+)
XLOC_030490 BX255908.1 coding upstream 173822 56258431 ~ 56259830 (+)
XLOC_030489 CR753837.1 coding upstream 175486 56256188 ~ 56258166 (+)
XLOC_030488 CR753837.2 coding upstream 184917 56246736 ~ 56248735 (+)
XLOC_030494 NA coding downstream 35941 56474610 ~ 56525693 (+)
XLOC_030495 tmem232 coding downstream 526508 56965177 ~ 56997795 (+)
XLOC_030496 NA coding downstream 582919 57021588 ~ 57025500 (+)
XLOC_030497 pja2 coding downstream 771568 57210237 ~ 57234118 (+)
XLOC_030498 NA coding downstream 800049 57238718 ~ 57241553 (+)
XLOC_030487 NA non-coding upstream 247708 56184865 ~ 56185944 (+)
XLOC_030485 NA non-coding upstream 339456 56093930 ~ 56094196 (+)
XLOC_030502 NA non-coding downstream 1041345 57480014 ~ 57485614 (+)
XLOC_030510 BX950179.1 non-coding downstream 1599103 58037772 ~ 58037886 (+)

Expression


Co-expression Network