RNA id: TCONS_00059543


Basic Information

Item Value
RNA id TCONS_00059543
length 794
lncRNA type retained_intron
GC content 0.39
exon number 2
gene id XLOC_030482
representative True

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 55934129 ~ 55952128 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AGTCATCACTGCTGGACCAACACAAGTGCTTTGGTGTCCGGCTGCATCAATGCCCTTGGGTTGGTCATGGTGGGCAACTTCCAAGTGGATCATGCCAAGACGCTTCACTATGTTGGAGCAGGTGTAGCTTTCCCCGCAGGCTTGCTGTTTGTGTGTCTGCAGTGTGTTCTGACATACCGTATAGCAGAGACAGCACTGGACTACTGGATGGCTCATGTACGCGTGGCTCTCTCGGCTGGAGCTCTCGTATCACTTGTCCTCAGTATCCTTACTAAAAATACTAATCACTATTTACAGTTTAGCATATCAGTATATACAGTCATGATCTAATACATGAAAATCAAATTTGTTTGAATACACTTGAACATGATGTTATTGGCATAAAACGCAGTGTGGCTAATTGGTTTTTAACAGAAGATTATAAAAGATTAAGTTTGGCAGTTGGGTTTTCACATTGCTAACATTTCAGTATTGGCCGTACTTCATCAAATGTCAAAGTTTGGCAAGTGAAAATCccagttttgttatttatttattcattcattcattttatttttggcttagtgtctttataaatcaggggttgccacagtggaatgaaccgccaacttattcagcatatgttttacacagcagatgcccttccagctgcaacccgtcactgggatACAGTTATGTTGTTatagcaaatatttttaaatatattttttggggggaactaaactaaactataaacataaatttaatttacacAATGGCATGTAGTCTTCAACTAGAGTATTTTTTGGTGGGca

Function

GO:

id name namespace
GO:0010506 regulation of autophagy biological_process
GO:0005764 lysosome cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-1576 Predicted to be involved in protein localization to plasma membrane. Predicted to be located in plasma membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. Orthologous to human TMEM150A (transmembrane protein 150A).

Ensembl:

ensembl_id ENSDART00000147143

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00061469 lncRNA upstream 39085 55905187 ~ 55906713 (+) False XLOC_030481
TCONS_00061467 lncRNA upstream 39088 55905133 ~ 55906710 (+) False XLOC_030481
TCONS_00061468 lncRNA upstream 39088 55905158 ~ 55906710 (+) False XLOC_030481
TCONS_00061470 lncRNA upstream 39307 55905575 ~ 55906491 (+) True XLOC_030481
TCONS_00061794 lncRNA upstream 226660 55717725 ~ 55719138 (+) True XLOC_030480
TCONS_00061471 lncRNA downstream 147249 56093930 ~ 56094196 (+) True XLOC_030485
TCONS_00061795 lncRNA downstream 238184 56184865 ~ 56185944 (+) True XLOC_030487
TCONS_00059551 lncRNA downstream 311750 56258431 ~ 56259830 (+) True XLOC_030490
TCONS_00061796 lncRNA downstream 486971 56433652 ~ 56438669 (+) True XLOC_030493
TCONS_00061797 lncRNA downstream 527929 56474610 ~ 56508203 (+) False XLOC_030494
TCONS_00059540 mRNA upstream 256142 55626693 ~ 55689656 (+) True XLOC_030478
TCONS_00059539 mRNA upstream 256189 55626693 ~ 55689609 (+) False XLOC_030478
TCONS_00059538 mRNA upstream 596369 55265550 ~ 55349429 (+) True XLOC_030477
TCONS_00059537 mRNA upstream 628847 55265274 ~ 55316951 (+) False XLOC_030477
TCONS_00059536 mRNA upstream 694368 55225497 ~ 55251430 (+) True XLOC_030476
TCONS_00059544 mRNA downstream 37589 55984270 ~ 55989773 (+) False XLOC_030483
TCONS_00059545 mRNA downstream 37682 55984363 ~ 55987938 (+) True XLOC_030483
TCONS_00059546 mRNA downstream 76505 56023186 ~ 56027776 (+) False XLOC_030484
TCONS_00059547 mRNA downstream 79350 56026031 ~ 56027776 (+) True XLOC_030484
TCONS_00059548 mRNA downstream 173294 56119975 ~ 56125769 (+) True XLOC_030486
TCONS_00059541 other upstream 274216 55671466 ~ 55671582 (+) True XLOC_030479
TCONS_00059516 other upstream 1837284 54106010 ~ 54108514 (+) True XLOC_030460
TCONS_00059514 other upstream 2082564 53824969 ~ 53863234 (+) True XLOC_030458
TCONS_00059512 other upstream 2188293 53700294 ~ 53757505 (+) True XLOC_030457
TCONS_00059510 other upstream 2338095 53581489 ~ 53607703 (+) False XLOC_030457
TCONS_00059549 other downstream 300055 56246736 ~ 56248735 (+) True XLOC_030488
TCONS_00059550 other downstream 309507 56256188 ~ 56258166 (+) True XLOC_030489
TCONS_00059556 other downstream 343454 56290135 ~ 56305811 (+) True XLOC_030492
TCONS_00059578 other downstream 2091091 58037772 ~ 58037886 (+) True XLOC_030510
TCONS_00059579 other downstream 2265480 58212161 ~ 58212284 (+) True XLOC_030511

Expression Profile

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