RNA id: TCONS_00059548


Basic Information

Item Value
RNA id TCONS_00059548
length 1391
RNA type mRNA
GC content 0.43
exon number 5
gene id XLOC_030486
representative True

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 56119975 ~ 56125769 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AAAACATTTGCCacaaacagaaatgaaattcacaaatcaacaaaaagtcagaGAAAACCATCCCAGGCAGTTCATTTTTCAAAAACAGGGAAAAAGCTGTCATCAGAACTTCAGAAACTGAGGTTTGAGGATCTTAGCGAATCAGAATCTAGTAGCATCCGTAAAGACTCCCAACCAAATCAAGATAAAGAGTTTGAGATTGTGTTTGGTGTGGCCCCATGTTTATTGGCTCTCACTCGGGGAAGAAGGAGTGCAAGTTGTCTGTTTGTGAAAAGTGGCGAAGGGCCGGAGAGAGATGCCATTCTAAGGGTCTGTCAGGAGGCCATCAGACGTGGTGTACAGATAAAAAGAGTTAATAAACAAACGCTTGAGAAGATGTGTGATGGAAAGGTACACCAGGGACTGTGTCTGCAAGCAAGTTGTCTTGGGTTTATCAAAGAAGAAAGACCAATAACATCTCTTGAGGTGAAGAATCAGAGGCCCTTATGGCTGGTTTTGGATGGAGTGCAGGATCCGATGAATCTTGGTGCCATTTTGCGGTCTGCATACTATCTAGGAGTGGATCGGATTGTCAGCAGCATTAATAACAGcTGTCCTCTGACGCCTACTGTAAGCAAAGCCAGCGCTGGGGTGATGGAGGTCATGGATGTGTTTGGCTGCAGCAATTTGAAACGCATGATAAAGGTGAAGGTGGAGGAAGGTTGGCAGGTAGTCGGCACTGTTGGGTTGGAAGAAGGCAGTTCTCAATCCAATGTTTTGTCATGTTCGGATTTCAAGATGTCCAGACCAACACTGCTGTTAATGGGTGGAGAGGGTGACGGTCTCTCTTCAGAACTGCGTCAgctgtgtgatgttctgattACAATCCCTCCACGTAGACACATGCATCCTGGAGTAGAGTCACTCAACGTGTCGGTAGCCACAGGCATCCTGCTGCACTCTCTTCTGTCCACCCGCAAAGGAAactgttgatgatgatgatgatgatggcaaCAGCGACAAGGCTACAGCATTATTTACTCTGACGTCTCTCATTAGCCTCCAACAGTGATTAATGACTGGATTACTTCATCAATTAACAGTCGGAGAGTCTGGAGAGGCCCATTGATCAGATAAAGAGAGCCTGTAGATGCATTTTGGTCCAGTTACTGACTATGACCACCGTGTTTAAGGCAAGACCTGCACTGCACCATGTCTCTATCATCTTAGCAACGATCAAGACATGCTTTTAAAAGCAGAGACATAATGATTCATTAATCATCTACTTTACGAAGTGTTACTGTAGACTTTTGCCAGATTTAAATTGATAAAGTCATGTTAAATGAACTATGGATGTTTttgatattatattaaaaataaaatgatgaaaaGCCATGAAAGCTGAAAAGATA

Function

GO:

id name namespace
GO:0006396 RNA processing biological_process
GO:0005739 mitochondrion cellular_component
GO:0008173 RNA methyltransferase activity molecular_function
GO:0003723 RNA binding molecular_function

KEGG:

id description
ko03009 Ribosome biogenesis

ZFIN:

id description
ZDB-GENE-060526-229 Predicted to enable RNA binding activity and RNA methyltransferase activity. Predicted to act upstream of or within RNA processing. Predicted to be active in mitochondrion. Orthologous to human MRM1 (mitochondrial rRNA methyltransferase 1).

Ensembl:

ensembl_id ENSDART00000083137

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00061471 lncRNA upstream 25779 56093930 ~ 56094196 (+) True XLOC_030485
TCONS_00059543 lncRNA upstream 173294 55945798 ~ 55946681 (+) True XLOC_030482
TCONS_00061469 lncRNA upstream 213262 55905187 ~ 55906713 (+) False XLOC_030481
TCONS_00061467 lncRNA upstream 213265 55905133 ~ 55906710 (+) False XLOC_030481
TCONS_00061795 lncRNA downstream 59096 56184865 ~ 56185944 (+) True XLOC_030487
TCONS_00059551 lncRNA downstream 132662 56258431 ~ 56259830 (+) True XLOC_030490
TCONS_00061796 lncRNA downstream 307883 56433652 ~ 56438669 (+) True XLOC_030493
TCONS_00061797 lncRNA downstream 348841 56474610 ~ 56508203 (+) False XLOC_030494
TCONS_00061798 lncRNA downstream 348846 56474615 ~ 56510202 (+) False XLOC_030494
TCONS_00059546 mRNA upstream 92199 56023186 ~ 56027776 (+) False XLOC_030484
TCONS_00059547 mRNA upstream 92199 56026031 ~ 56027776 (+) True XLOC_030484
TCONS_00059544 mRNA upstream 130202 55984270 ~ 55989773 (+) False XLOC_030483
TCONS_00059545 mRNA upstream 132037 55984363 ~ 55987938 (+) True XLOC_030483
TCONS_00059542 mRNA upstream 167847 55934129 ~ 55952128 (+) False XLOC_030482
TCONS_00059552 mRNA downstream 142667 56268436 ~ 56274174 (+) True XLOC_030491
TCONS_00059553 mRNA downstream 152097 56277866 ~ 56306081 (+) False XLOC_030492
TCONS_00059554 mRNA downstream 152101 56277870 ~ 56305724 (+) False XLOC_030492
TCONS_00059555 mRNA downstream 152110 56277879 ~ 56280674 (+) False XLOC_030492
TCONS_00059559 mRNA downstream 839408 56965177 ~ 56997795 (+) False XLOC_030495
TCONS_00059541 other upstream 448393 55671466 ~ 55671582 (+) True XLOC_030479
TCONS_00059516 other upstream 2011461 54106010 ~ 54108514 (+) True XLOC_030460
TCONS_00059514 other upstream 2256741 53824969 ~ 53863234 (+) True XLOC_030458
TCONS_00059512 other upstream 2362470 53700294 ~ 53757505 (+) True XLOC_030457
TCONS_00059510 other upstream 2512272 53581489 ~ 53607703 (+) False XLOC_030457
TCONS_00059549 other downstream 120967 56246736 ~ 56248735 (+) True XLOC_030488
TCONS_00059550 other downstream 130419 56256188 ~ 56258166 (+) True XLOC_030489
TCONS_00059556 other downstream 164366 56290135 ~ 56305811 (+) True XLOC_030492
TCONS_00059578 other downstream 1912003 58037772 ~ 58037886 (+) True XLOC_030510
TCONS_00059579 other downstream 2086392 58212161 ~ 58212284 (+) True XLOC_030511

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000059_01351954_01355411.mRNA True 1627 mRNA 0.44 5 CI01000059 1351954 ~ 1355886 (+)