RNA id: TCONS_00059553


Basic Information

Item Value
RNA id TCONS_00059553
length 2327
RNA type mRNA
GC content 0.44
exon number 12
gene id XLOC_030492
representative False

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 56277866 ~ 56306081 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GATGATGTCACAGTAAGTTGCAGCGTGGGACAGACATGGCAGCTTCCATATCACAGCAGCTCGAGGATTTGTTAAATCCTTTACCACACTTCGTGGACCCCGAGGACGACCAAGATGAAGACACCAAAGCGAAAGTCATAGAGAAGTTTGATGAAGGAGGTGATGAGAACGATGAAGAGCTTTTACCTGGTCATCTGCGGAAACGCTCTGGGGCCATTCTGGCTGATGGTGACCAACGATATCGTGGAAAGGCAACATCCAGAAAAGACCTACAGAAAGATTTGGATGGATCAGcagatgaagatgatgatgataatgatgatggtgttgatgatgaagatgaaagtgGAATGCTGGAAAAGTACATGGAATGcatggatgatgatgatgataatgatgatgatgatgatgatgatgatgatgatgatgatgatgatgttgagcATCAAAATGATGATGACGAGGATCTCGTTGGAGATGATGGTTCACAGATGTCCAGCTTGGTCTCCAAAATGAAGGGCACAGATTTTATGAAACTCACAGAGGGATTGGATGACCTGGGAGACAGTGACGAAGATGAGGAAACTGCTGACAGTGAAGAAGAGGAAGGAGAGAGTGATGAAGGCTCCGAGGAGGAgatggaagaagaggaggaatCAGGCTTGAGGACCTTCTCAAAAGAGAAAGTCGATGAAGAGGTTGAAAAAGGGAGAGCCGTGAAAAATCAGCTTGCCCTTTGGGACCTGATGCTTGAAAGGCGGATCAAAATGCAGAAAGCTCTTGTGACAGCCAATCAACTTCCACAACCACAAACATTCTCAGAGTTCAAGAGCAGGGGAGGGGCTGAATATGCTGATGCTTTGAAAAATAGTCATAAAGCTCTCAAGGCTCTACAAAGGTCTCTGCTGGAACTTCAAGATCTGCTGCTCCACCAAAACAAGGAAACAAGAGCCATCTCTCAGGGCAAAACCTGGGGGGATGGCAGTGctaaagatgatgatgaagagatTAATAGTGAAGATGATATGGATGAAAATGAAGGTGATGACCAAGAGGTAGAACAGAAAGCAGCTCGAAACGGACCTCCCAAACGAAAACTGGAAATGGCAGATTATCCCAACTTTATGGCCAAACGCTTTGCTGCATTTCAACCGTATCGTGATACTACTCTCCAGAAATGGTATGACAAGACACGGCTAACAACGGGGAAGAACAATAAGGGTTTTGGAGCATTTGACAGGAACATCCTGACGCAGGTGGAACAGGTTTTAATGGACAAAGAGAGGCTGGTGAGGCGTACACAGACGCGCAGGTCTGAATACAGAGTCCTGGGGAAACCAGAGCCAGTTACTCCTGAAATAGACAACACCATCTCAGAGGGAGAGGTGGCTGAACTGGCAGTAAAAGCCAACATGCACCTCAAAGATCTGGATGAGAAcatttttgatgatgatgatttttatcATCAGCTTCTCCGAGAGCTTATTGAGCGCAAAACAAGTGCAACAGACCCCAATGATCAAGTGGCCATGGgaaaGCAATGGCTTGCTATCCAGAAACTGCGTAGTAAAATCAAGAAGAAGGTGGACACCAAAGCCAGCAAAGGCAGAAAAATCAGGTTTCACGTTCACAGTAAGCTGATGAATTTTATGGCTCCTATGGACAACAGCAGCATGAGCGATGATGCACGGTCTGAGCTGTTTCGTTCCTTGTTTGCAAATGGTCCAGTGACAACACAATGACTGAAACATCTGTCCCAACATGCTTATACTCCGGGTGTGTGTGTACTACAGATGTCCACACACGCGCCCATACTTATCTACTGCTCTTGCTGGTGAAATCCCTCAGGAACCCCAAACATATTTCCTTCTTTAAGTGACTTGCtgtaaatgaaactaaagagtTATTGTGATTTGTGAGCTGACACATTTTAGTGCCtctttatattaaaaacattgtcaacacacacacacacacagagtgtttTCATTGATGTCCTAATTGTACTGTTAGCACATGATTAAATCTAGTGAAAGCGATATCTACCTCTAAATGAATTCCCTTGTCTGGAAGCGTTCTGTAATGTTATCTGATCTGTGGTATCAGAGGAACCTTCACCTTCAATTATCTGCTTAAGTTTTCATTATTGTGTCTGTCATAAATATAATTGGCTATTGAATTGGTGTGATTCAATTTGGTTGTTGGTGGGTAGAAGGAATATAGACTGAGAAAGCCACTCAGAGGGGGCTGAATGAGAGAATGATTGGAGAACTGATAAATCAATGAAAGTGTGTTCCTGGATCATTCTGTCTGCCATTTGATTTCTC

Function

GO:

id name namespace
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0005634 nucleus cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005730 nucleolus cellular_component

KEGG:

id description
ko03009 Ribosome biogenesis

ZFIN:

id description
ZDB-GENE-030131-9654 Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be located in membrane and nucleus. Predicted to be integral component of membrane. Predicted to be active in nucleolus. Orthologous to human AATF (apoptosis antagonizing transcription factor).

Ensembl:

ensembl_id ENSDART00000170610

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00059551 lncRNA upstream 18036 56258431 ~ 56259830 (+) True XLOC_030490
TCONS_00061795 lncRNA upstream 91922 56184865 ~ 56185944 (+) True XLOC_030487
TCONS_00061471 lncRNA upstream 183670 56093930 ~ 56094196 (+) True XLOC_030485
TCONS_00059543 lncRNA upstream 331185 55945798 ~ 55946681 (+) True XLOC_030482
TCONS_00061470 lncRNA upstream 371375 55905575 ~ 55906491 (+) True XLOC_030481
TCONS_00061796 lncRNA downstream 127571 56433652 ~ 56438669 (+) True XLOC_030493
TCONS_00061797 lncRNA downstream 168529 56474610 ~ 56508203 (+) False XLOC_030494
TCONS_00061798 lncRNA downstream 168534 56474615 ~ 56510202 (+) False XLOC_030494
TCONS_00061799 lncRNA downstream 168632 56474713 ~ 56508203 (+) False XLOC_030494
TCONS_00061800 lncRNA downstream 168639 56474720 ~ 56508203 (+) False XLOC_030494
TCONS_00059552 mRNA upstream 3692 56268436 ~ 56274174 (+) True XLOC_030491
TCONS_00059548 mRNA upstream 152097 56119975 ~ 56125769 (+) True XLOC_030486
TCONS_00059546 mRNA upstream 250090 56023186 ~ 56027776 (+) False XLOC_030484
TCONS_00059547 mRNA upstream 250090 56026031 ~ 56027776 (+) True XLOC_030484
TCONS_00059544 mRNA upstream 288093 55984270 ~ 55989773 (+) False XLOC_030483
TCONS_00059559 mRNA downstream 659096 56965177 ~ 56997795 (+) False XLOC_030495
TCONS_00059560 mRNA downstream 659106 56965187 ~ 56997795 (+) True XLOC_030495
TCONS_00059561 mRNA downstream 904156 57210237 ~ 57234118 (+) True XLOC_030497
TCONS_00059562 mRNA downstream 1014032 57320113 ~ 57325557 (+) True XLOC_030499
TCONS_00059563 mRNA downstream 1022454 57328535 ~ 57354915 (+) False XLOC_030500
TCONS_00059550 other upstream 19700 56256188 ~ 56258166 (+) True XLOC_030489
TCONS_00059549 other upstream 29131 56246736 ~ 56248735 (+) True XLOC_030488
TCONS_00059541 other upstream 606284 55671466 ~ 55671582 (+) True XLOC_030479
TCONS_00059516 other upstream 2169352 54106010 ~ 54108514 (+) True XLOC_030460
TCONS_00059514 other upstream 2414632 53824969 ~ 53863234 (+) True XLOC_030458
TCONS_00059578 other downstream 1731691 58037772 ~ 58037886 (+) True XLOC_030510
TCONS_00059579 other downstream 1906080 58212161 ~ 58212284 (+) True XLOC_030511
TCONS_00059581 other downstream 2066142 58372223 ~ 58382646 (+) True XLOC_030512
TCONS_00059609 other downstream 3130419 59436500 ~ 59479829 (+) False XLOC_030529
TCONS_00059620 other downstream 3449063 59755144 ~ 59755261 (+) True XLOC_030535

Expression Profile

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