XLOC_030525


Basic Information

Item Value
gene id XLOC_030525
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 59115869 ~ 59202263 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00059600
ccaaataaacaaatatgtaattTATGTTTTCTACAGCTAGATTAACACCATCTCCATTACCAGGATAACTATTTTCactattctctctctctttctctctctctctctctctctctcgttctcttgCATGGATGATCACATTTGGGGGCCCGTGGCATCTACAAGATTGAAAGCACGTGGTATACAGTATGTTATGTGTGGCACGTTGTAAATGCTGCGGCGTGGCGCCTCCTGGCGGTGGAATGCGGAACCGGAGGAATCCGTAACCGTACAGCAGAGCAGAGTCTCTCCGTGCATTGTCTTCACAAACAGTCCGCGGTGCGCCTTCACGCCGAGCAGAGCTCCCCCAGCGCCGCTCCCCTGCTCACCTCCAGCCGGCGCGCAGCGACAGCAAAATGGAAGTTAAATGGCTGACAAACGGAGTTGTTTAGTGCGCCTCACGGGGACAAGAATGTCCCAGAAAAGCGACGCGAACTCTTACCCAGATGGGTACAGGGTCCTCAATAGCTGCGAACTACGGGAGCTCCTACAAGATGAAGACAAAATGAATCAGATCGTGCGACTCAGTGAAAAGTTCCAGGAGCTCCAGATGGACAGGGATACCTTGTTAGTAACCAATCGGAGTCTTGCAGAAGATAGCCTTACCCGTCGGCCTCACCTTCAAAATGGCAAGCTGCAGTTGGCTGCAAAGTATGAAGAACTGGCAACGCTGAGCACCGCCTGCAGGGAAAAGCAAAGCCGACTTGAGGCCTTCACGGAGAAGCACAGCCCCCAGACTGCCCACAATCTGCTGCAGGAGGAGGTCACGCGTGCCGAAGAACAGTCTGAGGAGCTGCTGGAGAGATTCATGGAGGGCCACGTGCCCCTGGAGGAGTTCCTGGATTGTTTTCAAAGCCACAGGAAGACATACCACATCCGCCGCGCTCAAGCCGAGAAGCTCCAGGAGCTCAACAGACCCGGCAGGAAAGCCAAGAAACAAGAGGAGGAGCAGCACAAGAGGGAGGACCAGCTCAAGGAGTCCCATTCTAACGGCATCAGCGGCCCGCCTCGGGTCTTCCAACTTCGCTACGGCCTGACCCCGGCCATCCTGCTGCCTCTGTCATCTTCCTCCGCCTCAATACTGGACTCTCGCTCGGGCCAGCCACAGGGGTCAGGCCCCAGCGCCCCACACTCCTGCCCAGGGCAGCCTGTCGGCCTCAGAGTAATAGGACAGTTACCTGGCTGGCCTGTCAGGCCGGTGCGCCTGCAGCAACTGTACAGGCCCAGTCCCCATCAGCCTGAACCACCGTGTCGATAACGCTCAGCGCGAAAAACCCAAGACCGCACGAAGCCTTCATCGAGTCcataaataataatgatgctGCCATGAAATCAAATATCCAtgttagggatgcacgatattaTTGCCACATTCGAGGAATCAACTAATAATTGATTGAGATTTACTCATCGGCTTTAACTCGATATCAAAAATGATGCTGATCTGCCTTCTTCATAAAATGATGAGTCAGCAATACATTTTCTGGCAGGAGTGCTAGCTAAAAGATTAAGTCAACAATCTGctgattatttgattaaatagtTGATTGACAATATAAATTAACTAGGCACATTTCCATTACGAATTTGGGCAGAAGTCTGGCAGTATTTTCTAAATGTCAACATTTCCATTAGTTCAGTGGTCCCTGACCTTTTTTTCACTGCGAACTGCTTGCGGCTAGGCATGTGACGATAACCGTGtccaaggtatactgcggtttggaaaagtcaaggttttaagaCCGTCCaagttttctgctataccgttcctaaggtatgagtaatgtttttttatttaattttaatttttttttttttttcttttttagggcaacagtatctccagcagaaaagatctccagagttgcagttttaaattgtaaaaaaaatcggtgtttttgaaactaatgaagacagcataagtaaataattcatttgaattatttagcctgacatgtttactgctccgaaatatttgaaatgtttctcaaattcaaatatattgtgtacaaaggcaaggcaaggcaagctttttttatatagcacatttcatacacagtggcaattcaaagtgctttacataaacaagaataaaagtaaaataaaaataaaaaataaagtaaaataaaaataaagtaaaataaaaacaaataataaaaattagttaaaaaacataaaaatgggtaaaatgtaatataaaagaatgaagaagaagagaaaaacataatagtgcaatctgtcggacgcagcacagtgctcattcagtaaaggcacagctaaacagttgtgttttcagtcttgatttgaatgtgcctaatgttggagcacatctgatcatttctggaagctgaagaaaggggaaaaaggttttgttttttacccatacatttaaaaagaaaatattttagagcagtaatctcaatatcgtgatactgtgaaaccgtaATATTtatatctaaggttatcataccgtcagaatcttataccggctcaTGCCTACTTACGGCATTTATTCAACTTGGTGTGTCTATCTGGCACGCATGTCGATTGAAAATAACTAACTTCCCGTGCTCTAGAAAAGACAGGATAGGCTAACGGATCCTTTTTTTAGAGACTTCCATCATTTGAGATCTCCAAAAGTTGATCtacttgcacagacatggtgtaTTCACCTGAttgatccattccttggcagttcacaGGTCCTTCGATGGGCCTTTTcccctgaggaaagaaactttccaaagacgtctctttcttacttattttgctgcTTTAGAGCTAAATTTGGGCGCTCAAATGGCCGAGATGTAACCGAGAGAATACAgtcgtttttcaaaataaaagttttttcaaaataaaagatcgttcagattcagataataaataaaacggaaataatgaATGATTTCATGTGCAGCCCGGTACCAACTGATCCATGGACCGGTACCGGCCCGGTGGTTGAGACCACTGCATTAGCTgactaaaacataataaaatcaaaaattatagtaaaatataaagGTTTACTTACTAGTCAATGCactagtcattttatttttaatagaaggAGATCTGTCAGCCATCAGTGCGTTATTTCAGGGTTCCTACAAGTCTTGGAATTGctggaatatcatggaattttaTTTTAGACAGCAAATTTCAgggaattttatatatttttttgtccaaGTCATTGAATGTCATGgatttttatttgttgatttcaATTTTACTTGCCATTAATCAGAATGAAACTTtaaataccattttttttttgcatttgtttaagtttttTCTATTGTTAtggttaatttattttctttctgtgcCTTTTATTATTTTCCCGCTTGTCGACGTTCAgtcaaatatattaaaacaatataataagaaaatgacAGTTTACAACATTAAGCAGCACACGTTTTCCTTTGTTTTGCTATatataaatggaagtgaatgaaactGGAAGTCTTGACACATTTAGATGAGTGACAAAAATCAGGGAGTTTGACATTTGGCTTAAAGTGGGAAACCCGCCTTCATGTCTGCCTCCAGGtctttgtaaatcatgacattacTCTGTTGCTTgaccttaataataatataaatgtatatataaaggtTTATACCTTTAGTTTTACTGGACAATAGTGTCTacacaggaaagcatggggaagAAAGAAGGGAAAAGGATTGGTTCCCGAACCCAGAATTGAACTCTGGTCAGCATGAGCACATTAGTGCTATGCTATAATAGTTTTGTAGTTGGTGTGCTCCATCTTTAAAGAGTGACCATATTATATACGCCATGTGACCTGTTTCCATTGCAGTTTTGTAAAATATtccttttcccttttttaaaacaGCTCTAAAACCACCTCATGCAAGCATAAAAACGCGAGCAAtgcaaactttttttctttttttgatgatGTGTTTGGTCATTTTTGTTTAATGATGCACATTTCCATATAGGCATATTTTCAATTCACTATTTTGATTTGCACAGTTTTAAGGGTAATGGAAAGGCGCCTAGTAATTCAGGTTGCAAAGTTATTATTGCGATATTGTATCAGTAAAATGAACAGCAGACAATTGTAGACTAACAAATAGAATATCTgtgaaaattcatttaaaaaatgttggcttATTGGATCTCAGCAGAAATCAAAATATCGTGCATCTCTGATTCATGTGTCCAAAAAGGGAGGAGAGCGGAAAGCCATAAAGTATTTGTTGATGTCGCTTGTCGTTGTTGCTCGTACGTTTCTCTTCATTTGGTTTGTGTAGTTTGTGTGGGTTTGTTCAGTCGagctgctgtttgtttgtttgtttgtttgtatgagGGAAGTGGCCTGTTTCAAGAGACGCTGCTTTTTAGACTGGAAGGTGTTTTTTGGGGGGGTCAGTGATGGACTTGTGATATGGCACCTCTTTTGTAATGTTTATGGGTGTTCAATAAAGTCTAATCATGATGTTTATTTTAAGCCT

Function

GO:

id name namespace
GO:0030097 hemopoiesis biological_process
GO:0044085 cellular component biogenesis biological_process
GO:0030099 myeloid cell differentiation biological_process
GO:0002520 immune system development biological_process
GO:0002262 myeloid cell homeostasis biological_process
GO:0000028 ribosomal small subunit assembly biological_process
GO:0071826 ribonucleoprotein complex subunit organization biological_process
GO:0022613 ribonucleoprotein complex biogenesis biological_process
GO:0022618 ribonucleoprotein complex assembly biological_process
GO:0043009 chordate embryonic development biological_process
GO:0051726 regulation of cell cycle biological_process
GO:0019538 protein metabolic process biological_process
GO:0043603 cellular amide metabolic process biological_process
GO:0048513 animal organ development biological_process
GO:0043604 amide biosynthetic process biological_process
GO:1901564 organonitrogen compound metabolic process biological_process
GO:1901566 organonitrogen compound biosynthetic process biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:0043043 peptide biosynthetic process biological_process
GO:0048534 hematopoietic or lymphoid organ development biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0006412 translation biological_process
GO:0030218 erythrocyte differentiation biological_process
GO:0048856 anatomical structure development biological_process
GO:0002376 immune system process biological_process
GO:0010467 gene expression biological_process
GO:0048872 homeostasis of number of cells biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0042254 ribosome biogenesis biological_process
GO:0042255 ribosome assembly biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0044267 cellular protein metabolic process biological_process
GO:0000470 maturation of LSU-rRNA biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0042273 ribosomal large subunit biogenesis biological_process
GO:0042274 ribosomal small subunit biogenesis biological_process
GO:0061028 establishment of endothelial barrier biological_process
GO:0001885 endothelial cell development biological_process
GO:0006518 peptide metabolic process biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0034622 cellular protein-containing complex assembly biological_process
GO:0034101 erythrocyte homeostasis biological_process
GO:0032501 multicellular organismal process biological_process
GO:0002181 cytoplasmic translation biological_process
GO:0032502 developmental process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0009790 embryo development biological_process
GO:0009792 embryo development ending in birth or egg hatching biological_process
GO:0044391 ribosomal subunit cellular_component
GO:0044422 obsolete organelle part cellular_component
GO:0044424 obsolete intracellular part cellular_component
GO:1990904 ribonucleoprotein complex cellular_component
GO:0022625 cytosolic large ribosomal subunit cellular_component
GO:0022626 cytosolic ribosome cellular_component
GO:0022627 cytosolic small ribosomal subunit cellular_component
GO:0044444 obsolete cytoplasmic part cellular_component
GO:0044445 obsolete cytosolic part cellular_component
GO:0044446 obsolete intracellular organelle part cellular_component
GO:0005829 cytosol cellular_component
GO:0005840 ribosome cellular_component
GO:0032991 protein-containing complex cellular_component
GO:0015934 large ribosomal subunit cellular_component
GO:0015935 small ribosomal subunit cellular_component
GO:0005622 intracellular anatomical structure cellular_component
GO:0043226 organelle cellular_component
GO:0043228 non-membrane-bounded organelle cellular_component
GO:0043229 intracellular organelle cellular_component
GO:0043232 intracellular non-membrane-bounded organelle cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005198 structural molecule activity molecular_function
GO:0003723 RNA binding molecular_function
GO:0003735 structural constituent of ribosome molecular_function

KEGG:

id description
ko00230 Purine metabolism
ko00240 Pyrimidine metabolism
ko03020 RNA polymerase
ko03230 Viral genome structure
ko05164 Influenza A
ko05169 Epstein-Barr virus infection
ko05016 Huntington disease
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00059600 True 4533 lncRNA 0.41 4 59115869 59202263

Neighbor

gene id symbol gene type direction distance location
XLOC_030524 rabep1 coding upstream 32571 59030096 ~ 59083298 (+)
XLOC_030523 derl2 coding upstream 103270 58996765 ~ 59012599 (+)
XLOC_030522 ccdc84 coding upstream 419605 58687541 ~ 58696264 (+)
XLOC_030521 foxr1 coding upstream 431414 58679071 ~ 58684455 (+)
XLOC_030520 zgc:194948 coding upstream 438876 58665648 ~ 58676993 (+)
XLOC_030526 prkrip1 coding downstream 32158 59234421 ~ 59248274 (+)
XLOC_030527 upk3b coding downstream 50438 59252701 ~ 59264707 (+)
XLOC_030528 rasa4 coding downstream 75930 59278193 ~ 59391081 (+)
XLOC_030529 clip2 coding downstream 189920 59392183 ~ 59480161 (+)
XLOC_030530 NA coding downstream 287057 59489320 ~ 59489621 (+)
XLOC_030514 NA non-coding upstream 694369 58416064 ~ 58421500 (+)
XLOC_030511 FQ378020.1 non-coding upstream 903585 58212161 ~ 58212284 (+)
XLOC_030510 BX950179.1 non-coding upstream 1077983 58037772 ~ 58037886 (+)
XLOC_030502 NA non-coding upstream 1630255 57480014 ~ 57485614 (+)
XLOC_030498 NA non-coding upstream 1874316 57238718 ~ 57241553 (+)
XLOC_030533 NA non-coding downstream 403443 59605706 ~ 60222140 (+)
XLOC_030534 NA non-coding downstream 432672 59634935 ~ 59635180 (+)
XLOC_030535 CR854831.1 non-coding downstream 552881 59755144 ~ 59755261 (+)
XLOC_030536 NA non-coding downstream 1023310 60225573 ~ 60226473 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000059_03157245_03158887 NA coding CI01000059 null 3157245 ~ 3159364 (+)