XLOC_030520 (zgc:194948)


Basic Information

Item Value
gene id XLOC_030520
gene name zgc:194948
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 58665648 ~ 58676993 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00059593
GGGGGTGTTGTGTCCCCTAACCTTTGCAGaaataccaATCAGTTTGCTGAATCCTAACACTGATGGGGTGCTGGCGAGTACATTCCCCAACTCTTTTCTACTCCAAATGCCTGACTGCTCAATTTATGGAAACCAAAGTGTTTTACTGCTGTACACAGAAGCGCCCACCAATCTAAACAATACAGTGAATTTCACCGTTCAGCCTTGTCCTGTTAGTCAGTCGTGGTACCTTCTGGGTAACCTCAAAAATGGCACAACATACAGCATGTCTTATAAAATTGGAAATGACACAAGCTCAGTTTTGACTAATACAACTACCAATGtcaatGATTACCAGCAGATTGACACTGGTCTTCGGGCACGCAGTGGAGCAATGGTGGTGATCACTGTCATCCTGTCTCTGGCCATGGTGTTCCTCCTGGTTGGCATTATtctcgtcttcttcttcttctctggcTGAGCTGAACATGACCAATAttttatcaa

Function

symbol description
zgc:194948 Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human UPK2 (uroplakin 2).

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-081022-167 Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human UPK2 (uroplakin 2).

Ensembl:

ensembl_id ENSDARG00000103164

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00059593 True 486 mRNA 0.44 5 58665648 58676993

Neighbor

gene id symbol gene type direction distance location
XLOC_030519 pou2f3 coding upstream 63341 58550291 ~ 58602307 (+)
XLOC_030518 oafb coding upstream 134632 58520266 ~ 58531016 (+)
XLOC_030517 FQ378016.1 coding upstream 153039 58487368 ~ 58512609 (+)
XLOC_030516 slc37a2 coding upstream 182612 58455488 ~ 58483036 (+)
XLOC_030515 ccdc15 coding upstream 214999 58421536 ~ 58450649 (+)
XLOC_030521 foxr1 coding downstream 2078 58679071 ~ 58684455 (+)
XLOC_030522 ccdc84 coding downstream 10548 58687541 ~ 58696264 (+)
XLOC_030523 derl2 coding downstream 319772 58996765 ~ 59012599 (+)
XLOC_030524 rabep1 coding downstream 353103 59030096 ~ 59083298 (+)
XLOC_030525 NA coding downstream 438876 59115869 ~ 59202263 (+)
XLOC_030514 NA non-coding upstream 244148 58416064 ~ 58421500 (+)
XLOC_030511 FQ378020.1 non-coding upstream 453364 58212161 ~ 58212284 (+)
XLOC_030510 BX950179.1 non-coding upstream 627762 58037772 ~ 58037886 (+)
XLOC_030502 NA non-coding upstream 1180034 57480014 ~ 57485614 (+)
XLOC_030498 NA non-coding upstream 1424095 57238718 ~ 57241553 (+)
XLOC_030530 NA non-coding downstream 812327 59489320 ~ 59489621 (+)
XLOC_030533 NA non-coding downstream 928713 59605706 ~ 60222140 (+)
XLOC_030534 NA non-coding downstream 957942 59634935 ~ 59635180 (+)
XLOC_030535 CR854831.1 non-coding downstream 1078151 59755144 ~ 59755261 (+)

Expression


Co-expression Network