XLOC_030522 (ccdc84)


Basic Information

Item Value
gene id XLOC_030522
gene name ccdc84
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 58687541 ~ 58696264 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00059595
CTGAACGGCACATTACGTCGCTGTTTGGAAAATACAACGCGAATGTTAGCGTGGGCTTTCGCTGAAGAAACGAACTCTTTGCAGACAAATGGGTCCATTTTATTGCTCCATCTGCGGAAAAACGGACTTTTCTGGAAAAGGACACATTTTTGGGAAAAGCCACCAGAGCAAACTTAAAATAATTCTTGTCAAATTCACGGAGAAGGTCAAAGAAGCAAGGCGGACTTTTAAAAGTCCTCAGGTGGAGAAATACGGTCCTCATCATGACGTGAAGTTCTGGTGTTACTGCTGCGCGCTGGAGGTTCAGAAACACGTGACTGACAGTAACATCACTGTGCTTTATGGAGGACTGCTAGAACACATGAGCACCCCAGAGCaccgcaaaaacacacacaagttcTGGTGGGACAATAAAGCAGATCCCAAACTACGAGACAAGTTTATCATAACACAAGAGGACACTGAGAGGTTCAAGTCTGAGGTTTCCAAAGCTCTTAAACAGTTTGAGGAAAAAGAGgatgtttttattaaacagCAGGCTGTGGTGATTCGCTCTCAGGAGCAGCACAGGCTGGAGCTCCTCCAATCACTATCAGAGCCTGATCCAGAACTGGAGCAACCTGCTGAACTGGAGCACTACAGCAATGCACACACATCCAGAAGTTCCCACAGAGGCTCTTATGAACCAGAGGCACAGGCGGGACCGAGCCATGAGGATCTGCACAGTCAGTGGAGGAAACCAGGACTCAGCTTAACTTTCGTTGGCTACCAGGACTCTTCCAGCAGTGGAAATGTTCATACAGGAGCAGTACCGCCGTGGCTGCTGGATGACCCTGGTGATGAAGCTTCAGAAGGACAGCAGGAGATGAAGCCCTCAGTGCAGGAGTTTCTCAAACACAAGGAGCAGGAGAAACTAAAGAAGCTTCCGCCTAATCGTGTGGGTGCAAACTTCGACCACAGCTCGCATACTGATGCCAACTGGCTGCCATCTTTTGGACGAGTGTGGAACAGCGGCAGGCGCTGGCAGTCTCGGCATCAGTTCAGAGAAGAAGAGGCAAACACTAAAGGAAAGAGGAAGAGGAGAGATGATGGGAAATTCACAAAGAAGCCAAAAGACCTCACTAACGGAGAGAAATGAAGTCTACATCCCCAGTAGGGGGGACTTAAACAGCATGCACTGTCTTTCTCATATTGAGACTTTTCAACTCGCCTCAATTAAAAACCAGGACTATTTAAGGTAGGTTAGTGTTCTTGTgaggtgaaaaaaaaatgaaacgcaCTGTTTGTGTTTCCAGTTTATTGAATACATTTTTGCTACAGATGTTTGTGTAATTTCCTTTTTGGTCAAAAATCCAAAACATCCTTCCCACTCTCCGCAAAAGGTAAATGTGATAAAATGTAGACACAATGTGCAATATCTTCTTTCCATTTTGAACAATCCATCAGTTCAGTCAAATTGAATAGAATCTTGTCTATTAGAGCTATTTCATGTTCTCAACAGAAAGCCGAGACCATATTAATgttcaataatataataaaatacctCAAACGTCTAGACAGAATAAAAATAcagattacattaa
>TCONS_00059596
ACATTACGTCGCTGTTTGGAAAATACAACGCGAATGTTAGCGTGGGCTTTCGCTGAAGAAACGAACTCTTTGCAGACAAATGGGTCCATTTTATTGCTCCATCTGCGGAAAAACGGACTTTTCTGGAAAAGGACACATTTTTGGGAAAAGCCACCAGAGCAAACTTAAAATAATTCTTGTCAAATTCACGGAGAAGGTCAAAGAAGCAAGGCGGACTTTTAAAAGTCCTCAGGTGGAGAAATACGGTCCTCATCATGACGTGAAGTTCTGGTGTTACTGCTGCGCGCTGGAGGTTCAGAAACACGTGACTGACAGTAACATCACTGTGCTTTATGGAGGACTGCTAGAACACATGAGCACCCCAGAGCaccgcaaaaacacacacaagttcTGGTGGGACAATAAAGCAGATCCCAAACTACGAGACAAGTTTATCATAACACAAGAGGACACTGAGAGGTTCAAGTCTGAGGTTTCCAAAGCTCTTAAACAGTTTGAGGAAAAAGAGgatgtttttattaaacagCAGGCTGTGGTGATTCGCTCTCAGGAGCAGCACAGGCTGGAGCTCCTCCAATCACTATCAGAGGTTTGTTTTCCTGCGATGCTCCAAGCGTATCCACATCTCACTAATCTTCTCTTTTGGTTTATTTTGAtggataaatgtttatttttaggctctgctatttttaaaaaaagagtacATGTTTGATAGAGTAATTCTTAAAAAGACAAATGGACCATTACTGTTGACTTTTCCTGAATCAAACTTAGCCTGATCCAGAACTGGAGCAACCTGCTGAACTGGAGCACTACAGCAATGCACACACATCCAGAGGCTCTTATGAACCAGAGGCACAGGCGGGACCGAGCCATGAGGATCTGCACAGTCAGTGGAGGAAACCAGGACTCAGCTTAACTTTCGTTGGCTACCAGGACTCTTCCAGCAGTGGAAATGTTCATACAGGAGCAGTACCGCCGTGGCTGCTGGATGACCCTGGTGATGAAGCTTCAGAAGGACAGCAGGAGATGAAGCCCTCAGTGCAGGAGTTTCTCAAACACAAGGAGCAGGAGAAACTAAAGAAGCTTCCGCCTAATCGTGTGGGTGCAAACTTCGACCACAGCTCGCATACTGATGCCAACTGGCTGCCATCTTTTGGACGAGTGTGGAACAGCGGCAGGCGCTGGCAGTCTCGGCATCAGTTCAGAGAAGAAGAGGCAAACACTAAAGGAAAGAGGAAGAGGAGAGATGATGGGAAATTCACAAAGAAGCCAAAAGACCTCACTAACGGAGAGAAATGAAGTCTACATCCCCAGTAGGGGGGACTTAAACAGCATGCACTGTCTTTCTCATATTGAGACTTTTCAACTCGCCTCAATTAAAAACCAGGACTATTTAAGGTAGGTTAGTGTTCTTGTgaggtgaaaaaaaaatgaaacgcaCTGTTTGTGTTTCCAGTTTATTGAATACATTTTTGCTACAGATGTTTGTGTAATTTCCTTTTTGGTCAAAAATCCAAAACATCCTTCCCACTCTCCGCAAAAGGTAAATGTGATAAAATGTAGACACAATGTGCAATATCTTCTTTCCATTTTGAACAATCCATCAGTTCAGTCAAATTGAATAGAATCTTGTCTATTAGAGCTATTTCATGTTCTCAACAGAAAGCCGAGACCATATTAATgttcaataatataataaaatacctCAAACGTCTAGACAGAATAAAAATAcagattacattaatattaaAGGATACCTTGCAGTCTTTTAtttctcctttcttttttttagtaGTTTCTGTTAAAATAATACATGACTGAACGCTTTAGAtgcaaaagaagaaaacaaaataataaattgagTCTCTGT

Function

symbol description
ccdc84 Predicted to be involved in negative regulation of centrosome duplication and regulation of protein catabolic process. Predicted to be located in centrosome. Orthologous to human CENATAC (centrosomal AT-AC splicing factor).

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000059606

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00059595 False 1583 mRNA 0.44 11 58687541 58696138
TCONS_00059596 True 1873 mRNA 0.42 10 58687550 58696264

Neighbor

gene id symbol gene type direction distance location
XLOC_030521 foxr1 coding upstream 3086 58679071 ~ 58684455 (+)
XLOC_030520 zgc:194948 coding upstream 10548 58665648 ~ 58676993 (+)
XLOC_030519 pou2f3 coding upstream 85234 58550291 ~ 58602307 (+)
XLOC_030518 oafb coding upstream 156525 58520266 ~ 58531016 (+)
XLOC_030517 FQ378016.1 coding upstream 174932 58487368 ~ 58512609 (+)
XLOC_030523 derl2 coding downstream 300501 58996765 ~ 59012599 (+)
XLOC_030524 rabep1 coding downstream 333832 59030096 ~ 59083298 (+)
XLOC_030525 NA coding downstream 419605 59115869 ~ 59202263 (+)
XLOC_030526 prkrip1 coding downstream 538157 59234421 ~ 59248274 (+)
XLOC_030527 upk3b coding downstream 556437 59252701 ~ 59264707 (+)
XLOC_030514 NA non-coding upstream 266041 58416064 ~ 58421500 (+)
XLOC_030511 FQ378020.1 non-coding upstream 475257 58212161 ~ 58212284 (+)
XLOC_030510 BX950179.1 non-coding upstream 649655 58037772 ~ 58037886 (+)
XLOC_030502 NA non-coding upstream 1201927 57480014 ~ 57485614 (+)
XLOC_030498 NA non-coding upstream 1445988 57238718 ~ 57241553 (+)
XLOC_030530 NA non-coding downstream 793056 59489320 ~ 59489621 (+)
XLOC_030533 NA non-coding downstream 909442 59605706 ~ 60222140 (+)
XLOC_030534 NA non-coding downstream 938671 59634935 ~ 59635180 (+)
XLOC_030535 CR854831.1 non-coding downstream 1058880 59755144 ~ 59755261 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000059_02850004_02856819 NA coding CI01000059 null 2850004 ~ 2857261 (+)