XLOC_030513 (HEPACAM)


Basic Information

Item Value
gene id XLOC_030513
gene name HEPACAM
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 58397646 ~ 58412538 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00059582
ATGCCAGGAAATTGGGCCAAACAATTCAAGCTTTTGTGCTCGTCTCTGGCAGGGAATTGGGCTTTATTCTGCTCATTTGTTCAGGGGGTGAACATCACCAGTCTGGAGACTCTGATCAGAGGCACCGTGGGTGGAGAAGCTCTGCTCTCTGTCCGCTACTCAAGCACCAGTCAGGACTCTCCTGTGATCAAATGGCAGCTGAAGAGGGACAAACCTGTCACAGTGGTCCAGTCCATCGGCACAGAGATCATCGGTAACCTGCGTCCAGAATACAGAGACCGGATCTTGGTGTTTGAAAACGGGACACTGCTGCTCCACAACCTCAGGCTCTCTGATGAGGGCACTTACGAAGTCGAGATCTCCATCACAGATGACACCTTCACTGGAGAGCGCAACATCAATCTCACTGTGGATGAGCCTATCTCTAAACCACACGTCTATATGTTGGCCTCCACTGTTCTGGAACTGACGGAGAACTTCACGTTAAACTGCACTCATGACACAGGGACAAAGGCCATCTACAGCTGGGCAAAAGGTGGCCATCCATTGCTAAATGAGACGCGTCTGCTGCTGTCTTCAGATCAGAAGGTGCTAACCATCACACGTGTACAGATGTCAGATGATGACGTCTACAGCTGTATGGTGGAGAACCCAATTAGTAGCATGAGAAGTCCAGCAATCAGACTCACCGTTTACAAAAGGAGCTCCCTTTATATCATACTGTCTACAGTGGGCATCTTCCTCCTCATCACCCTTGTAACTGTGTGTGCTTGCTGGAAACCAACAAAAaaatCAAAAAGACAGAAGTCCAAATCTATACCAAGAACTATTCCACCAAACCACCACATTAGGTACCATGATGTCAAGCCAGAGGATGCCATCCCCATAATGACTGACCACGAGCGCAGGAATCCTGTATCGCTCTACATTTTAAAGGAAAAGGATTCTCCTCCTGGCGAACCGGCATCAGCATGTGAAACCTGCACCTCCAACAGCAGCAGTCCTCCAAGCTACAGCAGCTCAATACCTCCTCCATCTGACTCACTGGAGCCGCCAGCTCGCTCCTCTCGCCGATACCCTCGCACCTCCACCAAATCCCCACCGCATCACCGCCGCAGGAGAGGACACAGCGAGAGTCCCCCGGCGCCTTCCTCTCCCTATGGCCGGGAGTCCGGTCAAGCCCCTCGATCCCCTGTGTCCTTTAATCCAGCCAGAAAGCCTCAGGATCCCTCTACCCCTCCACAAGATCCCAGAGGCTCCCCAAAAACATAG

Function

symbol description
hepacam Predicted to be involved in cell adhesion and regulation of growth. Predicted to act upstream of or within cellular protein localization. Located in axon and cell-cell junction. Implicated in megalencephalic leukoencephalopathy with subcortical cysts 2A and megalencephalic leukoencephalopathy with subcortical cysts 2B.

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000112032

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00059582 True 1272 mRNA 0.52 8 58397646 58412538

Neighbor

gene id symbol gene type direction distance location
XLOC_030512 nrgna coding upstream 14991 58372164 ~ 58382655 (+)
XLOC_030511 FQ378020.1 coding upstream 185362 58212161 ~ 58212284 (+)
XLOC_030510 BX950179.1 coding upstream 359760 58037772 ~ 58037886 (+)
XLOC_030509 btg4 coding upstream 470953 57924611 ~ 57926693 (+)
XLOC_030508 ppp2r1ba coding upstream 599550 57773222 ~ 57798096 (+)
XLOC_030514 NA coding downstream 3526 58416064 ~ 58421500 (+)
XLOC_030515 ccdc15 coding downstream 8998 58421536 ~ 58450649 (+)
XLOC_030516 slc37a2 coding downstream 42950 58455488 ~ 58483036 (+)
XLOC_030517 FQ378016.1 coding downstream 74830 58487368 ~ 58512609 (+)
XLOC_030518 oafb coding downstream 107728 58520266 ~ 58531016 (+)
XLOC_030502 NA non-coding upstream 912032 57480014 ~ 57485614 (+)
XLOC_030498 NA non-coding upstream 1156093 57238718 ~ 57241553 (+)
XLOC_030496 NA non-coding upstream 1372146 57021588 ~ 57025500 (+)
XLOC_030525 NA non-coding downstream 703331 59115869 ~ 59202263 (+)
XLOC_030530 NA non-coding downstream 1076782 59489320 ~ 59489621 (+)
XLOC_030533 NA non-coding downstream 1193168 59605706 ~ 60222140 (+)
XLOC_030534 NA non-coding downstream 1222397 59634935 ~ 59635180 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000059_02739963_02740730 HEPACAM coding CI01000059 null 2739963 ~ 2740735 (+)