RNA id: TCONS_00059568


Basic Information

Item Value
RNA id TCONS_00059568
length 1003
RNA type mRNA
GC content 0.44
exon number 2
gene id XLOC_030503
representative False

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 57641554 ~ 57650998 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GGCAAATGAACGTCATTCACATAATTATTCCAAAAAAGGTCCGTAGTGGGCTCGTCTGCCAGGGGCCGTCAGTATCACTCTATTTAAGTGCGTAGACAGAAGATTTGCAGAAGAGGCCCAGACTCAAAATGGACATCGCCATCAATCCCCCGTTCCGGCGCATCTTATTTCCTATCTTCTTTCCCCGCCGGCAATTTGGGGAGCATATTACTGAGGCCGACGTGATCTCCTCATTGTACTCCCAACGATCTTCCTTTCTTCGCAGTCCAAGCTGGATGGAAAGCGGAGTTTCTGAGGACGGTCACGGTTTTGTCTCACGAGAGTTTTTGAGAAAATACCGTGTCCCTGTTGGTGTGGATCCAGCCTCCATCACGTCCTCGCTGTCTTCTGATGGTGTGCTGACAGTGACAGGCCCACTAAAGCTCTCAGACGGCCCAGAACGCACCATCGCCATCCCCGTAACTCGTGATGACAAAACCACCGTCGCTGGCCCTCAGAAGTAAAGATGCTAAACGTCAACTTTCAACCTTTTGTCTCTTGTCGTCACCTGTCTCAACATGCTTATGCTACATTACAAGGAAAATAATCACATTAACCTAATGCTAGCCTACTGACGGCCAAATGTTTGTGTTCTCTTAGAAAACAATTAGGGTTGAAATGGCGTCAAAACCACAGTCTTTACCCAAAcgaaatacattttcttttacaATAAAGTATTGTCTGCTGCTGATGCCACCAAACAAAGGAGCTTTTGTAGCTTATATCTTGCAGCCCGGACTGCAAGACAAAGTATTTGTGAGTAGGAGTCTCTTTCCTTGgcatttttgaaaaacaaaatggaTCACTGTATCAAActtcaacagaagagagaaacctATATACATTACTATTGAAACAAGTGTAGAAAACTATGGCTCATTGATCATTTTGGGTTCAAATATGCCTTTGCCTGGATTTGGGACCAGAATACAAAGCTAAAGAGGTGTAAATAGTTTCTTGAAAA

Function

GO:

id name namespace
GO:0007519 skeletal muscle tissue development biological_process
GO:0030239 myofibril assembly biological_process
GO:0007626 locomotory behavior biological_process
GO:0060047 heart contraction biological_process
GO:0005575 cellular_component cellular_component
GO:0005212 structural constituent of eye lens molecular_function
GO:0051082 unfolded protein binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040718-419 Enables unfolded protein binding activity. Acts upstream of or within several processes, including heart contraction; myofibril assembly; and skeletal muscle tissue development. Is expressed in several structures, including brain; heart; lens; liver; and otic vesicle. Human ortholog(s) of this gene implicated in cataract 16 multiple types; dilated cardiomyopathy 1II; fatal infantile hypertonic myofibrillar myopathy; and myofibrillar myopathy 2. Orthologous to human CRYAB (crystallin alpha B).

Ensembl:

ensembl_id ENSDART00000157992

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00061806 lncRNA upstream 157137 57480014 ~ 57484466 (+) False XLOC_030502
TCONS_00061805 lncRNA upstream 400050 57238718 ~ 57241553 (+) True XLOC_030498
TCONS_00061804 lncRNA upstream 616103 57021588 ~ 57025500 (+) True XLOC_030496
TCONS_00061472 lncRNA upstream 1115910 56514990 ~ 56525693 (+) True XLOC_030494
TCONS_00061803 lncRNA upstream 1125859 56513455 ~ 56515744 (+) False XLOC_030494
TCONS_00059573 lncRNA downstream 70934 57715810 ~ 57718733 (+) True XLOC_030505
TCONS_00059583 lncRNA downstream 771188 58416064 ~ 58417514 (+) False XLOC_030514
TCONS_00061473 lncRNA downstream 772418 58417294 ~ 58421500 (+) True XLOC_030514
TCONS_00059600 lncRNA downstream 1470993 59115869 ~ 59202263 (+) True XLOC_030525
TCONS_00061807 lncRNA downstream 1743417 59388293 ~ 59389887 (+) True XLOC_030528
TCONS_00059566 mRNA upstream 155989 57480014 ~ 57485614 (+) True XLOC_030502
TCONS_00059565 mRNA upstream 187812 57442271 ~ 57453791 (+) True XLOC_030501
TCONS_00059563 mRNA upstream 286688 57328535 ~ 57354915 (+) False XLOC_030500
TCONS_00059564 mRNA upstream 286694 57337630 ~ 57354909 (+) True XLOC_030500
TCONS_00059562 mRNA upstream 316046 57320113 ~ 57325557 (+) True XLOC_030499
TCONS_00059570 mRNA downstream 14022 57658898 ~ 57671298 (+) True XLOC_030504
TCONS_00059571 mRNA downstream 70026 57714902 ~ 57718471 (+) False XLOC_030505
TCONS_00059572 mRNA downstream 70738 57715614 ~ 57718850 (+) False XLOC_030505
TCONS_00059574 mRNA downstream 81549 57726425 ~ 57738336 (+) True XLOC_030506
TCONS_00059575 mRNA downstream 98939 57743815 ~ 57763179 (+) True XLOC_030507
TCONS_00059556 other upstream 1335792 56290135 ~ 56305811 (+) True XLOC_030492
TCONS_00059550 other upstream 1383437 56256188 ~ 56258166 (+) True XLOC_030489
TCONS_00059549 other upstream 1392868 56246736 ~ 56248735 (+) True XLOC_030488
TCONS_00059541 other upstream 1970021 55671466 ~ 55671582 (+) True XLOC_030479
TCONS_00059516 other upstream 3533089 54106010 ~ 54108514 (+) True XLOC_030460
TCONS_00059578 other downstream 392896 58037772 ~ 58037886 (+) True XLOC_030510
TCONS_00059579 other downstream 567285 58212161 ~ 58212284 (+) True XLOC_030511
TCONS_00059581 other downstream 727347 58372223 ~ 58382646 (+) True XLOC_030512
TCONS_00059609 other downstream 1791624 59436500 ~ 59479829 (+) False XLOC_030529
TCONS_00059620 other downstream 2110268 59755144 ~ 59755261 (+) True XLOC_030535

Expression Profile

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