RNA id: TCONS_00059564


Basic Information

Item Value
RNA id TCONS_00059564
length 4560
RNA type mRNA
GC content 0.36
exon number 5
gene id XLOC_030500
representative True

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 57328535 ~ 57354915 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AGTTCAGTTCGACACACTCTTGAACAGTCACTACAGAGCTGCACTTTACACACTTGTTACGCCTGCATGTTGAAAGACAACTGAGAAAGAACAGACAGGAATTACCTGCACATTTCTGTGGTTGAACAGAAAGACACTTCTTTGAGGAAGCAAGGAATTCAGAGAGATTTGTTTTTGGCATCTCTGTACAGTAAGATGGATATGTCACATTCACATCACCATGTCGAGGAGACAACCATGCCATCTCCTGCCTCAGACGATCATGGGGGTCATTTAACGACCTCTGGCAATGGCCACGGAGATcacatgatgatgatgCAAATGACCTTCTACTTCGGCTACAAAAATGTGGAGCTGCTTTTTGCTGGGCTGGTCATCAACACACCAGGAGAGATGGCCGGCGCATGCATTGGCGTGTTCTTGTTAGCTGTGTTGTACGAGGGCCTAAAGATCGGCCGGGAGGTCCTGTTGAGAAGGAATCAGGTGAACGTGCGCTACAACTCCATGCCTGTACCAGGATCTGATGGCACCGTACTCATGGAGACACACAAAACAGTCGGCCAGCGAATGCTTAGTATGGCCCACTTCTTACAGACGCTTcttcacatcatccaagtggtgGTCAGTTACTTCCTCATGCTGGTGTTCATGACGTACAACGGTTACCTGTGCATCGCGGTGGCGGCAGGAGCAGGCCTCGGCTATTTTCTGTTCAGCTGGAAGAAGGCAGTAGTGGTGGATATTACAGAACACTGTCATTAACCTCTCGTGTATAacctcaaaaagaaaaaaattgcccACTGTACAATCCCAGCATGCAACACAACAAGTGTAGAGCACCATATGATTTCATTCATCTTGGTAAATATTGGCCAAGTAgcattttaaagatttattttgatttgtttacaCAAATTAGCACCATATCTCATTTCCTGACAGCTCTGTTTTGGTTATTTAATTTTGGAAAATATGAGTGAGGAAGTTTTGTCTAATGTTAATGGTGTAGTTGTGTATATTAAGCAAAGCTAACAAAGAACTTTACATTGCTTAGCGGCACAAATTAATATGaaacatttgtaaacatttttgacCTCTTGCGACCAATTATGACAAATCAATGCGAAATTTCACCACATTTTTGCAGCCAAACTCGAGTCATTTTAATAGGAATCCGCATATCCGTTAATAAGGTTTCCAAATTAACTGATTCGAAGTTAACTAATCTTAAAATCGTCAAAATTTAAATATCATTTATTACCGTTTACTAAATTTTCCGCCCATTGTCAATTTAGCAATTTAGCTATTTCATTATCGCAACATTTTATGAGGCTTCCAAATTTACTGATAACTAAATTATCATgacatttgtaaaaattaaaaagctcAAATTTGAAAAAGACATCACATTTATCAACATTCATAATTTTTACAGACAAACTCTAGACATTTTAATGTACGCAATCATTTTTGCGCAAATGCAAAGCAGTTTGTAACTGtttccaaattaaaaaaaatagtagatTGGATTTTCCAGTCCTAAATTTTTTTAgtaaaatttatttgaataagATTTCACTTAATTTTCAGAGACAAACTTATTTTAATGGTAATCCACACAATTTTGCAAAGTGCTAAAGATTTCCCCTAACATTTATTGCAACGACTTTGCCCAGGTTTCCCAAAAAAATTAGTAAGTTTATTGGGTTCTTGGGAAATTTCcagtctttaaatgcaaattttgggAAATAATCAAAGACAAACTCTAGTCACATTAATGTTCACAATCGTCAATTTTTGTGCAAATGCGGTTACGCAGTTTTTCAAGTTGTAAATTGGCCAATAGAACGTAGATTAGATTTTTGTAACTTTCCCACTCTTGAAAATTTCAATTCAatacatttgtgaaatatttacatTGCTGACTAAATTTTTGCAGACAAACAAATTTTTTTGGAACTCACTAAATATGATACAACTTAAAGCATTTTTTGACCTCTTGCGACCAGTCATGACGAAAAACATTTCACCAAATTTTTGCTGCCAAACTCTAGTCATTTTAATAGGAATCGACGCAACCGCTAATATCGCAAGTGCACAATTATTGCACCAGTTGACAAGGTTCTCCAAATTAACTGATTAGATAGTAATTGGATTTGCGTGAAATTCCAATTCATTTATTACTATTCACAAAATTTTCACACCATCATCAGTTTTGAACAAATGTGAAAGATTTCTCTACACATTTATCACAAAGATTTACGAAGGTTTCCAATTTTCACTGACAAACCCGTTTTAATGTACGCGATCAGCATTTTTTGCAAATGTGAAGGATTTTCCAACACCTTTCTCTAACAGTTTCCAAAATGCAAAAGAAAGTAGAATATTATTCCCATAAACTTTCCGTCTTGAAAATTTCAATCCAATACATGTGTGAAAGATTTTTACTAAATTTTCGCAGACAAACTCCTTTAAATGGGAATCCACAAAATTTCGTAAAGTGCTAATGACTTCCCTTAATATTTATCGCAACGGTTTACAAAGTTTCCTCGCAAACTATTAAGTTTATTGGTCTTGTTAAATTCCCAATTTTGAAAATTTACAAATTTGCAAATATTGGTAAGAGCGAATTTTTTAAAGGCAAACTTTTACAATCTTTTGCAATCAATTTTGGGCAAATACGGTTAcgttttttttgttacattttcctGTTGCAAATTGGCCAATAGAAAGTAGACTGAATTCTTGTAACTTTCCCAGTCTTGAAAATTTTCAgtctaattaattttaataagattTCACTTAATTTTCGTAGACAAATTCCTTTTCATCGGAATCCAGACACTTTCGTAAAGTTCTAATGATTTCCCTTAACATTTATTGTGACAATTTACAAGTAAAGTTTATTGAACTCCTGTGTAATTCCCAATTTTGAAAATTTAAttgcaaatattaaaaaagagTGACTTCACTGAATTTGCAATTACAAACTCTAGTTATATTAATGTTCACAATCACCAATTTTGAGCGAATGCGCTTACGTTTTTGTAAAATGTTCAAGTTGCACATGGGCAGATAGAACATAGATTGGATTTCTTTAACTTTCCCAGTCTTGAAAATTTAAATCCAATACATTTGTGACGTATTTACATTGCTAACTGAATGTTTTgcgaacatttttattttttcgtaACTCTAATTTTCATGAATTTGTCTGGCAATTTGGTAAAAAGAACAAACAAGCTGCGCATCCTTCATCTCTACACTTCAGCCTgcacaatttaaaacattaagaTCATAACCGTCACCTTATCAGTCTACCTCCAGATGGTACCGAGTCACGAGTGACCCTGTTCACTATAAACACATCTGTTCTACACATCTCATGGATTATTATGTTTATGAAGGTGCTTTTGGGTGCAACAGAGCCTTACTAAACCCCTTTGCCTTAAACAAGGGTACCGACACCCAGGAGGCCGACTCTGTAAACTCTAAAAGCCAAACTGGATCTGCTGGACCCAGTAAACAAGCACTAGCGGCGGTGGGAAGGTGTttaatacttcttttttttttttttttttgaggttgtTATGGCCAAGTGTTTCAAATCAATGAAACGACAGTTAATAATCAGTGACCATTGTTTAGACTTAAACACTGGACTGAATGATGTTTGCACAAGAAAGAGAGGTTTTGGGACTCTGTGTTTGCGGAGTTTGAAGTCGAACTTTGCTCCCTTTGGagtgattttaaataaatattgggGGGGGAGATTggagaaaaataaattatatctgATGCCAGTGTCAccgatttttttttataatttatatttgtaaCACTCTAGTATGACTGTGTGTGATATCAATGTGTTCTGGCAATCTTTATGTAGATCCTTTTACGTTATGACatcttttaaatgacaaaatgtgGCGCGTTTGCGATGTCGGGTAAATCATGAGCCCTTTGGAACATTAAGGTCATCGCTCTGATTGTTACTGGGTAGCAGAATGTGAATTTTATGTTCAATATATGCCCCTTTGTTTGGGTGCGCCTTTTACATTCAGGACCCAATTAAAGTGCCCAAAGAGTGTCTGAAttgcttgtgaaaacaaaagccGAGGCTTTCTTACGGAGAAAATCACATATTTTAAACCAGTAAACATGTGGGTTTTAGTAGGAAGCCTATTTAAAATACCTTTCCTTTATATTTTAGTTACAAGCAGAACAAAGAAATGTGTGTAATCTCAGAGGTAAATATTCACATCATGTTGTTTTTGTAGCAGGTGCCACTCTGTAGAACTGTATTTGAGGATCGGTTCTCCGTTACGAGGCTTATTCGTATTGCAGATTGCTTTCGATATCAGAATAAGTTTGTGCTGTTTTATGTGTAGGAAAAAAACTGCTAGCCCTTGCGTGGAAGGACTGAACCTCATGTCCAGTGTTGTGGCCGTGTTAACATTTCTTAGTCTGTTTACAGTTCAGTCACATCTGTAATGTCCGACATGTAAACCGTACTGTAATCGTTAaagaaaatgatgaataaatgttatGATTTCA

Function

GO:

id name namespace
GO:0042539 hypotonic salinity response biological_process
GO:0071391 cellular response to estrogen stimulus biological_process
GO:0046688 response to copper ion biological_process
GO:0006811 ion transport biological_process
GO:0035434 copper ion transmembrane transport biological_process
GO:0006825 copper ion transport biological_process
GO:0006878 cellular copper ion homeostasis biological_process
GO:0005886 plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005375 copper ion transmembrane transporter activity molecular_function

KEGG:

id description
ko04978 Mineral absorption
ko01524 Platinum drug resistance
ko02000 Transporters

ZFIN:

id description
ZDB-GENE-040415-3 Predicted to enable copper ion transmembrane transporter activity. Acts upstream of or within cellular response to estrogen stimulus; hypotonic salinity response; and response to copper ion. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in plasma membrane. Is expressed in gill; gut; liver; locus coeruleus; and yolk syncytial layer. Orthologous to human SLC31A1 (solute carrier family 31 member 1).

Ensembl:

ensembl_id ENSDART00000012586

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00061805 lncRNA upstream 96077 57238718 ~ 57241553 (+) True XLOC_030498
TCONS_00061804 lncRNA upstream 312130 57021588 ~ 57025500 (+) True XLOC_030496
TCONS_00061472 lncRNA upstream 811937 56514990 ~ 56525693 (+) True XLOC_030494
TCONS_00061803 lncRNA upstream 821886 56513455 ~ 56515744 (+) False XLOC_030494
TCONS_00059558 lncRNA upstream 830832 56490733 ~ 56506798 (+) False XLOC_030494
TCONS_00061806 lncRNA downstream 125105 57480014 ~ 57484466 (+) False XLOC_030502
TCONS_00059573 lncRNA downstream 360901 57715810 ~ 57718733 (+) True XLOC_030505
TCONS_00059583 lncRNA downstream 1061155 58416064 ~ 58417514 (+) False XLOC_030514
TCONS_00061473 lncRNA downstream 1062385 58417294 ~ 58421500 (+) True XLOC_030514
TCONS_00059600 lncRNA downstream 1760960 59115869 ~ 59202263 (+) True XLOC_030525
TCONS_00059562 mRNA upstream 12073 57320113 ~ 57325557 (+) True XLOC_030499
TCONS_00059561 mRNA upstream 103512 57210237 ~ 57234118 (+) True XLOC_030497
TCONS_00059559 mRNA upstream 339835 56965177 ~ 56997795 (+) False XLOC_030495
TCONS_00059560 mRNA upstream 339835 56965187 ~ 56997795 (+) True XLOC_030495
TCONS_00059555 mRNA upstream 1056956 56277879 ~ 56280674 (+) False XLOC_030492
TCONS_00059565 mRNA downstream 87362 57442271 ~ 57453791 (+) True XLOC_030501
TCONS_00059566 mRNA downstream 125105 57480014 ~ 57485614 (+) True XLOC_030502
TCONS_00059567 mRNA downstream 286645 57641554 ~ 57645893 (+) False XLOC_030503
TCONS_00059568 mRNA downstream 286694 57641603 ~ 57644876 (+) False XLOC_030503
TCONS_00059569 mRNA downstream 286816 57641725 ~ 57650998 (+) True XLOC_030503
TCONS_00059556 other upstream 1031819 56290135 ~ 56305811 (+) True XLOC_030492
TCONS_00059550 other upstream 1079464 56256188 ~ 56258166 (+) True XLOC_030489
TCONS_00059549 other upstream 1088895 56246736 ~ 56248735 (+) True XLOC_030488
TCONS_00059541 other upstream 1666048 55671466 ~ 55671582 (+) True XLOC_030479
TCONS_00059516 other upstream 3229116 54106010 ~ 54108514 (+) True XLOC_030460
TCONS_00059578 other downstream 682863 58037772 ~ 58037886 (+) True XLOC_030510
TCONS_00059579 other downstream 857252 58212161 ~ 58212284 (+) True XLOC_030511
TCONS_00059581 other downstream 1017314 58372223 ~ 58382646 (+) True XLOC_030512
TCONS_00059609 other downstream 2081591 59436500 ~ 59479829 (+) False XLOC_030529
TCONS_00059620 other downstream 2400235 59755144 ~ 59755261 (+) True XLOC_030535

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU286338 False 39 lncRNA 0.38 1 CI01000059 2099629 ~ 2099667 (-)
mexican tetra (Astyanax mexicanus) TU286338 True 555 lncRNA 0.46 4 NC_035920.1 40335279 ~ 40338786 (+)