RNA id: TU286118


Basic Information

Item Value
RNA id TU286118
length 246
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G252069
representative True

Chromosome Information

Item Value
chromosome id CI01000059
NCBI id null
chromosome length 10376574
location 2111980 ~ 2112225 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CAGAGTCAAGCGACACATTAGATTTAATGAAAGTGAGATCTGATGACCTGAGTTCCCAGATGTTGGGGGTCTTTAGGGGGGTTTGAGCAGAACATGATTGATGAATCAATCTGGAGCCTCAGGAAAATAGTAAAATAACATAGCTAATCGACTGATGGCACCATAAGAACACACACAGTCCTAGTGACATCAAAGGCAGCAGACTAGGAAAATATTACAGTAAATCAATTGAACAAATCAAAATTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU286116 lncRNA upstream 561 2111043 ~ 2111419 (+) True G252067
TU286107 lncRNA upstream 53843 2057860 ~ 2058137 (+) True G252058
TU285985 lncRNA upstream 101301 2008538 ~ 2010679 (+) True G251941
TU285982 lncRNA upstream 194495 1914261 ~ 1917485 (+) True G251939
TU286045 lncRNA upstream 204951 1906432 ~ 1907029 (+) True G251999
TU286123 lncRNA downstream 10509 2122734 ~ 2123208 (+) True G252072
TU286125 lncRNA downstream 11739 2123964 ~ 2124297 (+) True G252074
TU286126 lncRNA downstream 12864 2125089 ~ 2125293 (+) True G252075
TU286007 lncRNA downstream 37492 2149717 ~ 2151818 (+) True G251963
TU285987 lncRNA downstream 60060 2172285 ~ 2173882 (+) True G251943
CI01000059_02100931_02106420.mRNA mRNA upstream 5560 2100931 ~ 2106420 (+) True CI01000059_02100931_02106420
CI01000059_02087382_02094472.mRNA mRNA upstream 16244 2087335 ~ 2095736 (+) True CI01000059_02087382_02094472
CI01000059_02068570_02070710.mRNA mRNA upstream 41144 2068570 ~ 2070836 (+) False CI01000059_02068570_02070710
CI01000059_01985427_01999889.mRNA mRNA upstream 112042 1985427 ~ 1999938 (+) True CI01000059_01985427_01999889
CI01000059_01893067_01914170.mRNA mRNA upstream 197734 1893067 ~ 1914246 (+) True CI01000059_01893067_01914170
CI01000059_02133197_02134625.mRNA mRNA downstream 20778 2133003 ~ 2135347 (+) False CI01000059_02133197_02134625
CI01000059_02199027_02200947.mRNA mRNA downstream 86738 2198963 ~ 2201185 (+) True CI01000059_02199027_02200947
CI01000059_02213426_02223792.mRNA mRNA downstream 101201 2213426 ~ 2224014 (+) True CI01000059_02213426_02223792
CI01000059_02246538_02247644.mRNA mRNA downstream 134313 2246538 ~ 2248128 (+) True CI01000059_02246538_02247644
CI01000059_02252357_02259906.mRNA mRNA downstream 139894 2252119 ~ 2260117 (+) True CI01000059_02252357_02259906
TU286110 other upstream 40056 2069478 ~ 2069578 (+) True G252061
TU285191 other upstream 450590 1627766 ~ 1661390 (+) True G251249
TU284915 other upstream 1044623 1064869 ~ 1067357 (+) True G251017
TU284955 other upstream 1132762 978741 ~ 979218 (+) False G251046
TU285978 other downstream 19267 2131492 ~ 2131636 (+) True G251935
TU286863 other downstream 1090514 3202739 ~ 3203091 (+) True G252732
TU287891 other downstream 3125534 5237759 ~ 5238233 (+) True G253654
TU289048 other downstream 4147818 6260043 ~ 6261633 (+) True G254692
TU289941 other downstream 5332717 7444942 ~ 7450195 (+) True G255434

Expression Profile