RNA id: TU285991


Basic Information

Item Value
RNA id TU285991
length 346
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G251947
representative True

Chromosome Information

Item Value
chromosome id CI01000059
NCBI id null
chromosome length 10376574
location 2174332 ~ 2174677 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TCCCAGCTGAGGAATAAGGGTCTTATCTAACCAAACGATCGCCATTTTCTAAAAAAAATAATAAAAAATTCTATACTTTTTAACCACAAATGCTCGTATTGCACTGCTCTGCGCCACAGATTATGTAATCATGTTGTGTGACGTAGGCGGAAGTACCAAGCAGGTTTTTACAAAGTGAACATGCAAAGACTAAGTCAAAAGGCCTTTACAAAAAAAGGTAAAACAACAATGTAGGACAATTTTGAAGTTGGAGGAGAAAATTAGACTTTTTCGCCCTACCGTGTTACTTCTATCTACGTCACGCGTGACCTTTCCAACGTGATTATGTAATGCGTGGCGCGTCGCA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU285987 lncRNA upstream 450 2172285 ~ 2173882 (+) True G251943
TU286007 lncRNA upstream 22514 2149717 ~ 2151818 (+) True G251963
TU286126 lncRNA upstream 49039 2125089 ~ 2125293 (+) True G252075
TU286125 lncRNA upstream 50035 2123964 ~ 2124297 (+) True G252074
TU286123 lncRNA upstream 51124 2122734 ~ 2123208 (+) True G252072
TU286155 lncRNA downstream 109355 2284032 ~ 2284241 (+) True G252099
TU286198 lncRNA downstream 200748 2375425 ~ 2375674 (+) True G252138
TU286228 lncRNA downstream 234772 2409449 ~ 2410513 (+) True G252164
TU286233 lncRNA downstream 244245 2418922 ~ 2419191 (+) True G252167
TU286235 lncRNA downstream 246129 2420806 ~ 2421033 (+) True G252169
CI01000059_02133197_02134625.mRNA mRNA upstream 38985 2133003 ~ 2135347 (+) False CI01000059_02133197_02134625
CI01000059_02100931_02106420.mRNA mRNA upstream 67912 2100931 ~ 2106420 (+) True CI01000059_02100931_02106420
CI01000059_02087382_02094472.mRNA mRNA upstream 78596 2087335 ~ 2095736 (+) True CI01000059_02087382_02094472
CI01000059_02068570_02070710.mRNA mRNA upstream 103496 2068570 ~ 2070836 (+) False CI01000059_02068570_02070710
CI01000059_01985427_01999889.mRNA mRNA upstream 174394 1985427 ~ 1999938 (+) True CI01000059_01985427_01999889
CI01000059_02199027_02200947.mRNA mRNA downstream 24286 2198963 ~ 2201185 (+) True CI01000059_02199027_02200947
CI01000059_02213426_02223792.mRNA mRNA downstream 38749 2213426 ~ 2224014 (+) True CI01000059_02213426_02223792
CI01000059_02246538_02247644.mRNA mRNA downstream 71861 2246538 ~ 2248128 (+) True CI01000059_02246538_02247644
CI01000059_02252357_02259906.mRNA mRNA downstream 77442 2252119 ~ 2260117 (+) True CI01000059_02252357_02259906
CI01000059_02262610_02274923.mRNA mRNA downstream 87590 2262267 ~ 2275181 (+) True CI01000059_02262610_02274923
TU285978 other upstream 39154 2131492 ~ 2131636 (+) True G251935
TU286110 other upstream 102408 2069478 ~ 2069578 (+) True G252061
TU285191 other upstream 512942 1627766 ~ 1661390 (+) True G251249
TU284915 other upstream 1106975 1064869 ~ 1067357 (+) True G251017
TU284957 other upstream 1195236 978741 ~ 979096 (+) True G251046
TU286863 other downstream 1028062 3202739 ~ 3203091 (+) True G252732
TU287891 other downstream 3063082 5237759 ~ 5238233 (+) True G253654
TU289048 other downstream 4085366 6260043 ~ 6261633 (+) True G254692
TU289941 other downstream 5270265 7444942 ~ 7450195 (+) True G255434
TU290615 other downstream 6179542 8354219 ~ 8354873 (+) True G256046

Expression Profile