RNA id: TCONS_00018777


Basic Information

Item Value
RNA id TCONS_00018777
length 1087
lncRNA type inter_gene
GC content 0.37
exon number 2
gene id XLOC_008509
representative True

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 24191710 ~ 24198497 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

tatatttatatatatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtatatatatatatatatgttacatGCCTGGGGGTGTTGCTCTGTTGTTCCCTCCTCCCCTCTCTGTTTCTATTTGCTGTCTCCTATACTTCTAAAATCTAGGTGTTACATGCCTGGGGGTGTTGCTCTGTTGTTCCCTCCTCCCCTCTCTGTTTCTATTTGCTGTCTCCTATACTTCTAAAATCTAGGTGTTCCGATTGGTTGGCAGAGTTCTCccgagtggaccaatcagaagagtaTGGGTGTTATTTAAACGCTCCAGTGATGACTCAGCCCAGATGAGAGGGGGATCCATGTTGCTTGTTGCTGCTGTGTTTTTGTAACTTTTGGTACCTATCTTGTGCTCGGGTTCGCTTTAAAgagtttttgtgatttaaaaataccTAGAGGGAAGTGAAGGGaagtatgtcacgtgacttacattttacacacacgtagtagattttttttgttattccacTAGGTAAGAGGCGGGTGCTACCATATGTATGTTTGTTCCAGTCAGTGCAGTTGAGTAAGGGGCGTGTGAcgctgaagatgttttttttcttatttacatatttctctTTAGTTATTTAGAGGTGGGGGAGGGATTAGTTAGCgggtgtttaatttgttattttctttgatttggcaccgCTTATTCTCCTTCCCTCCATCaggtatttttgtttactttttgcatttgcattttgttttattgtacatatttgtaaatatactttggGTGATTTAAATATTCACTTCTTTATCTTTATTGTAATAAAGCGAACCAGTTTTTTTGCAACGTCGTTGTCTGTGTTGATTCATAGCAGTTAACATCTCAGAGGAATTCTTAAAATATTGGGTTGTCATAATTATGTTAAGCCCTTTTTCATCCTCCGAGCCACACGGGgcgtaacaatatatatatatatatatatatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtttgttctgtgtatattttgtatatatgattacacacataaaaacatttcagaaaatgtttgttttttatttagatatta

Function

GO:

id name namespace
GO:0048731 system development biological_process
GO:0030154 cell differentiation biological_process
GO:0030182 neuron differentiation biological_process
GO:0007275 multicellular organism development biological_process
GO:0051239 regulation of multicellular organismal process biological_process
GO:0048856 anatomical structure development biological_process
GO:0048869 cellular developmental process biological_process
GO:0045595 regulation of cell differentiation biological_process
GO:2000026 regulation of multicellular organismal development biological_process
GO:0050767 regulation of neurogenesis biological_process
GO:0050793 regulation of developmental process biological_process
GO:0007399 nervous system development biological_process
GO:0032502 developmental process biological_process
GO:0045664 regulation of neuron differentiation biological_process
GO:0060284 regulation of cell development biological_process
GO:0022008 neurogenesis biological_process
GO:0048699 generation of neurons biological_process
GO:0021517 ventral spinal cord development biological_process
GO:0051960 regulation of nervous system development biological_process

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00018957 lncRNA upstream 29610 24149968 ~ 24162100 (+) True XLOC_008507
TCONS_00018775 lncRNA upstream 58873 24132554 ~ 24132837 (+) True XLOC_008506
TCONS_00017017 lncRNA upstream 149697 24035907 ~ 24042013 (+) True XLOC_008504
TCONS_00017015 lncRNA upstream 186427 23999569 ~ 24005283 (+) True XLOC_008505
TCONS_00017009 lncRNA upstream 401882 23784859 ~ 23789828 (+) False XLOC_008501
TCONS_00018958 lncRNA downstream 114059 24312556 ~ 24313122 (+) True XLOC_008511
TCONS_00017026 lncRNA downstream 365173 24563670 ~ 24569062 (+) False XLOC_008513
TCONS_00017028 lncRNA downstream 366631 24565128 ~ 24568931 (+) True XLOC_008513
TCONS_00018959 lncRNA downstream 383677 24582174 ~ 24583425 (+) False XLOC_008514
TCONS_00018960 lncRNA downstream 418073 24616570 ~ 24618644 (+) True XLOC_008515
TCONS_00017013 mRNA upstream 70789 23947932 ~ 24120921 (+) False XLOC_008504
TCONS_00017014 mRNA upstream 75497 23951560 ~ 24116213 (+) False XLOC_008504
TCONS_00017016 mRNA upstream 75497 24005289 ~ 24116213 (+) False XLOC_008504
TCONS_00017012 mRNA upstream 273227 23911655 ~ 23918483 (+) True XLOC_008503
TCONS_00017011 mRNA upstream 390211 23799461 ~ 23801499 (+) True XLOC_008502
TCONS_00017018 mRNA downstream 14350 24212847 ~ 24544680 (+) False XLOC_008510
TCONS_00017019 mRNA downstream 190285 24388782 ~ 24533380 (+) False XLOC_008510
TCONS_00017020 mRNA downstream 190285 24388782 ~ 24535558 (+) False XLOC_008510
TCONS_00017021 mRNA downstream 190309 24388806 ~ 24535558 (+) True XLOC_008510
TCONS_00017022 mRNA downstream 350557 24549054 ~ 24563042 (+) True XLOC_008512
TCONS_00016993 other upstream 741024 23446189 ~ 23450686 (+) True XLOC_008495
TCONS_00016990 other upstream 813522 23378071 ~ 23378188 (+) True XLOC_008494
TCONS_00016984 other upstream 1429272 22722682 ~ 22762438 (+) False XLOC_008489
TCONS_00016986 other upstream 1458677 22722712 ~ 22733033 (+) False XLOC_008489
TCONS_00016979 other upstream 1777457 22414124 ~ 22414253 (+) True XLOC_008485
TCONS_00017027 other downstream 365271 24563768 ~ 24569062 (+) False XLOC_008513
TCONS_00017035 other downstream 478416 24676913 ~ 24683290 (+) False XLOC_008517
TCONS_00017050 other downstream 763639 24962136 ~ 24962252 (+) True XLOC_008523
TCONS_00017063 other downstream 1271232 25469729 ~ 25469845 (+) True XLOC_008536
TCONS_00017070 other downstream 1436844 25635341 ~ 25656331 (+) True XLOC_008540

Expression Profile

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