RNA id: TCONS_00017018


Basic Information

Item Value
RNA id TCONS_00017018
length 4310
RNA type mRNA
GC content 0.49
exon number 18
gene id XLOC_008510
representative False

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 24212847 ~ 24544680 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AACGCTAGCACTCGAGAGGCATTTAATCGAGGGCACTATTAGATTATGTACGGTACAAACTTTGCGCGAAGCCTGAAGTTGTTCCAGTTGCTGACGCTAGGAGCTGTCCGCGGTGCTGAAACGGCTCGACTCAGTCTGAGAGGTGCTGACAGAAATTGAACATTCTCTGGCTTCTCCTCCGTCCACAATTACAAATCTGATCAGAGCTGCCCGTTTCGCGTGGCGACCTCTTCTCCTCGCGGAACTCCTGCGTCTTGCTCCTCTTTAATTATTCGGAAAGTGTTTTAATGCAAGGACATATTTTCTGTGAAAGGATCCCACTGCCGTGAGCATGAACTCGACTAGAAATTACAAACCAAGCATGGTCGTTCTGATCCTGGTCGTATTTGCTGGTATTGGGATGGCACGAGGGCAAGGATCCTTAACAGATGGGAGGTTAGCAGTCACCCAAAGAGGAGGTCAGCTAGAAGCAGAGGACGGGTCCAACCCATATCACACCACCCAGGACACAGACAGAGAATTACCCTTGTTCACCACGGCTCCCCCTTACAGTGGCCTCGACCACCATCCGCCTTTTAAGCCCTACCCGCCTTATGACCCACGTGGCCAAAGCCACGGCCAGTATTTTCAGGACAGTGGAGGGGCAGCGCACCATCCCACAATGCCATCCTCCAGTTCCCATCTCCTCCAGGACCCATCTACACAGTTGGTCCCACATGAAGAAGCACTGCCTTTTTCTGATGTAGCGGCTCCCAGAAGCACCACAATGGCTCCATCGGCTGCTGCCCTCACCCAGCCACATGTGCCCAAAATCCAACACAAACTTTCAGTAGAAACGCAGAGAAGAAGTTCAGATCCATCCATTTCTTTGAGCACCACTGATGCGCACACATCTGCACTGCCTGTTTCCAAACACTTAGATAGAGAAGACTTCACTCAAACTTTCAACATCAAGCCACAGGATGTGACTGTAGAGAGAAAGCCCTCTGTTGAACATGATGAATCTCCAGAAAGTGATGTTGATGTAAAAGCATCGTCATCAGTGGCTGGTGATTTGGATGACGAGACCACCACATCCACCATCATCACCACAACGGTCATTACCAACATGCAGACGCCAGCTCCGTGTAGCGCCAATTTCACATCGCCGGGAGGCTACATAGAGACACCACAGCAGGCTAGGAGCTGGTACAATGCCAATGTGGACTGCACATACACCGTGACCGTCTACATGGGCTATGGGGTGGAAATCCAGGTAATGAATGTGAGCCTGTCTGAGGGTGACGTAGTCATATTCGAAGACCTGGGTAACCGAGAACCTTCTGTCCTGGCCAACGAGTCCATCCTACTGAAAGGTCTGGTGGTGCGCAGCTGGAGCAACCAAATCTCCATCCACTTTCGCAGCCGCCAACCGCAGTCCAGCTCCTTACTCCTGCGCTATCAAGCTTTTGTGTTGAGTTGCAACTTCCCTGATAGACCAGCATATGGGGATGTTTCAGTCAGCAGCCTGCATGCAGAAGGAGAGGCCTATTTCTACTGCTTTAATGGATATCAGATCCAGGGTCCGTCCACACTGACGTGCCGCAACGCCACCATACCATACTGGAGCGGCAAAGTGCCACGCTGTCTTGTGGCCTGCGGTGGAATGGTGAAGAATGCGACTCTCGGCCGCATTGTGTCTCCTGGTTTTCCAGGCAACTACAGCAACAACCTAACCTGCCACTGGGTGCTGCAAGCCCCTGAAGGCCACCGGCTGCATGTGCACTTCGAGAAGGTGGCCCTCGCTGAAGACGACGACAGGTTTTTGATCAAAAACGGCAACCATATTGACTCACCCATCGTGTATGACTCGTATGAGGTGGAATACCTTCCTAATGAGGGAGTCGCTAGTTCCTCCAGACATCTCTTTGTGGAGTTCACTACAGATGGTTTCGGCACCAACACAGGAATGGCCATCCGATATGAAGCTTTTGCAGCGGGGCATTGCTACGAGCCATTCGTCAAGTACGGCAACTTCACCACCACTGACAGCACCTATGCTGTGGGCACGGTTGTGGAGTTCACCTGTGACCCCGGATACACTCTGGAGCAGGGCTCCGTTATCATCGAGTGCATGGATCCCAGCAACCCTCAGTGGAACGAGACTGAGCCCACCTGCAGAGCTGTTTGCAGTGGTGAGATCACAGATTCAGCTGGGATGGTCTTGTCTCCAAACTGGCCTGAGGCCTATGATAAGGGTCAGGACTGCATCTGGGGCATCCATGTTGAGGAGGACAAAAGGATCATGCTGGACATCCAAGTTCTCCACATGGGAAAGAATGACCTGCTGACTTTCTATGATGGAGATGACCTGACTGCAAAGATACTGGGCCAATACAGCGGCTCACGGCCTCGGTTCAAGCTCTACACCTCTATGGCTGATGTGACCATCCAGTTCCAATCAGACCCTGCTACCAACATCTATGGCTACAACAACGGCTTTGTGGTGCACTTTTTTGAGGTTCCTCGTAACGACACATGTCCAGAGCTTCCAGAGATCTCAAATGGCTGGAAGACCACATCCCACCCTGACCTTGTGCATGGCACAGTCGTCACCTATCAGTGTTATCCTGGCTTCGAGGTGGTGGGCACCGAAATGTTGATGTGCCAATGGGATCTGACCTGGAGCGGAGACCTGCCCAGCTGTGAAAGAGTGCTGTCGTGTCCAGACCCGGGCACAGTAGAGCACAGTCGCAGGGTGATGTCGGGGCCGCGTCTCATCGTGGGCTCCACTGTCCAGTACATCTGTAACAAAGGCTACTCGCTGTCAGGAAACAGCCTCCTTTCTTGCTACCACAGAGACTCCACTGGCCCCAAGTGGAGCGAGAAACTGCCCAAATGCATCCCGGATTCGTTTGAGCCGTGCAGGAACCCTGGCACTCCGGCCTACACCATCCAGAGCTCTGAGAAGCACGTGTATCAGGCTGGAGAAACTGTACGCTTCTCCTGCATGAATGGGTACGAGCTCCAGGGCGAACCTGTTCTCCGTTGTGTCCCCGGGCATCCTTCCAAATGGAGTCATCCACCGCCGCTGTGCAAAGCGGTAACACTGGAGTACATTGATGAACGCCGGCTGGATGTGGCCAGTGCAGACTTCAGTATGGAGGGGGCCAGTGTGGCTGTGTCCATTTTCATCCCTGTGGCCGTAATCATAATTATCATCTTGTCAATATATTTCTACTTTTCAAGGGTGCAGGGAAAATCTCTCCGGATGTCCATGTCAACGTCGCCACAGTATGATCACATTAGAGGAGAGTCTGCTTTTGAAAACCCCATTTATGAGACCACGAACAATGAGAGACCTATGATTCAAAGCAGCCACCAGAGGTTCTCTCTAGGATTCTGTTGTAAAGAAAGAGCCTGTAAGGAGAGTTGATCAGCACGGACAAAGCCGAGAAGGTCTGAACCGCTGGATTTAGAGCATCTCCATTTTTAGCGTCtctcttttgtgtttttgtttccaACATGCACTGGTTTTGTTACATACATAATCCCACCTGGCACAAAATGCAATTATATATGAACACGTGAATTTcttgaaaatctgaaaaatgtgttttttgtttgtctgaTCCGCAGGACACGAGAGAATACGAAGTCTCCATTTAAATAAAACCACGCTTGTTTTAGCATGGAGGACCGCAAGCCTTTCTCTGCCTTGTGGAAGATCTCAGTTCCTCTCACATCTTGTGTAGCCAACTCTGCTCTTAATCTCACCTACCTTCTCATCTTTTTTCCCATCTGCTGTAAATAGCACCTCGCTTCTGAGGACTTCCACAAGCCAAGAGTGTGGACAACATGATATTATTTTTGTAGCGCTTCAATAGCCATGGCCTAGCAGACTTGCTTGTACAGTTTTTACCCGTAATTGAGCCAAATTCAAAAAGGAATTGGATAAAATGACAGGCAATAGGGGAAACCATGATATTTATGTTACTGTTGTCTCTCTTTAaacacttttgctttttttttacttgacatttTTTGACTTGCAACACCCCGAGAGGCTTTGTAAGATTCAAAAAAAGTTGAAATATGAGAAATGGCTGCAATTGTGAAATACAAATGATGTCcattctcattgaaaatgaagtAATTGCACGATAAATGgtcagttataaaaaataaaacatttcattttctgGTGATAATGTGCTTCCATTATAATGGTATACACTACCATTCAAATGTTTGGTGTTTATATGATTATTAAAAGGTGCAGTTGGTTATCTGTCAAAATGCTAACCATTAGCATAATACCAAGGTCACTC

Function

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-110628-3 Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human SEZ6 (seizure related 6 homolog).

Ensembl:

ensembl_id ENSDART00000155502

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00018776 lncRNA upstream 6866 24179932 ~ 24205981 (+) True XLOC_008508
TCONS_00018777 lncRNA upstream 14350 24191710 ~ 24198497 (+) True XLOC_008509
TCONS_00018957 lncRNA upstream 50747 24149968 ~ 24162100 (+) True XLOC_008507
TCONS_00018775 lncRNA upstream 80010 24132554 ~ 24132837 (+) True XLOC_008506
TCONS_00017017 lncRNA upstream 170834 24035907 ~ 24042013 (+) True XLOC_008504
TCONS_00017026 lncRNA downstream 18990 24563670 ~ 24569062 (+) False XLOC_008513
TCONS_00017028 lncRNA downstream 20448 24565128 ~ 24568931 (+) True XLOC_008513
TCONS_00018959 lncRNA downstream 37494 24582174 ~ 24583425 (+) False XLOC_008514
TCONS_00018960 lncRNA downstream 71890 24616570 ~ 24618644 (+) True XLOC_008515
TCONS_00018961 lncRNA downstream 132233 24676913 ~ 24689697 (+) False XLOC_008517
TCONS_00017013 mRNA upstream 91926 23947932 ~ 24120921 (+) False XLOC_008504
TCONS_00017014 mRNA upstream 96634 23951560 ~ 24116213 (+) False XLOC_008504
TCONS_00017016 mRNA upstream 96634 24005289 ~ 24116213 (+) False XLOC_008504
TCONS_00017012 mRNA upstream 294364 23911655 ~ 23918483 (+) True XLOC_008503
TCONS_00017011 mRNA upstream 411348 23799461 ~ 23801499 (+) True XLOC_008502
TCONS_00017022 mRNA downstream 4374 24549054 ~ 24563042 (+) True XLOC_008512
TCONS_00017023 mRNA downstream 18824 24563504 ~ 24566394 (+) False XLOC_008513
TCONS_00017024 mRNA downstream 18824 24563504 ~ 24569062 (+) False XLOC_008513
TCONS_00017025 mRNA downstream 18877 24563557 ~ 24569061 (+) False XLOC_008513
TCONS_00017029 mRNA downstream 28246 24572926 ~ 24586952 (+) False XLOC_008514
TCONS_00016993 other upstream 762161 23446189 ~ 23450686 (+) True XLOC_008495
TCONS_00016990 other upstream 834659 23378071 ~ 23378188 (+) True XLOC_008494
TCONS_00016984 other upstream 1450409 22722682 ~ 22762438 (+) False XLOC_008489
TCONS_00016986 other upstream 1479814 22722712 ~ 22733033 (+) False XLOC_008489
TCONS_00016979 other upstream 1798594 22414124 ~ 22414253 (+) True XLOC_008485
TCONS_00017027 other downstream 19088 24563768 ~ 24569062 (+) False XLOC_008513
TCONS_00017035 other downstream 132233 24676913 ~ 24683290 (+) False XLOC_008517
TCONS_00017050 other downstream 417456 24962136 ~ 24962252 (+) True XLOC_008523
TCONS_00017063 other downstream 925049 25469729 ~ 25469845 (+) True XLOC_008536
TCONS_00017070 other downstream 1090661 25635341 ~ 25656331 (+) True XLOC_008540

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000072_02653471_02758823.mRNA True 2931 mRNA 0.54 15 CI01000072 2653471 ~ 2758823 (-)