RNA id: CI01000072_02653471_02758823.mRNA


Basic Information

Item Value
RNA id CI01000072_02653471_02758823.mRNA
length 2931
RNA type mRNA
GC content 0.54
exon number 15
gene id CI01000072_02653471_02758823
representative True

Chromosome Information

Item Value
chromosome id CI01000072
NCBI id null
chromosome length 5473029
location 2653471 ~ 2758823 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GGTTCTTTTATTGATGGGAGGTTAGCAGTCACCCAAAGAGGAGGTCAGCGAGAAGCAGAGGTTGGGTCTAACCCATATCACACTACACAGGACACAGATAGAGACCTGCCCCTGTTCACGACCGCTCCTCCTTACAGTGGCCTCGACCACCATCCACCTTTTAAGCCCTACCGGCCTTACGACCCCCGGGGCCAAAGCCACGAGCAGTATTTTCAAGACAGCGGAGGGGCAGTTCACCATCCCACAGTGCCATCCTCTAGTTCCCATCTCCTCCAGGATCTGTCCACACAGCTGGTCCCACACGAGGACGCGCCTCCATTCTCTGATGTAGCAGCTCCCAGAACCACCACAATGGCTCCATCGGCCGCTGCCCTCACCCAGCCCCACGTGCCCAACATCCAACACAATCCTTCAGTAGAAACGCAGAGGAAAAGCACAGAGGAACCACCCATATCCATGACCTTAGCGTCACTGACCACCACTGACACACACACATCCACACCGCCTGCTTCCAAAGAGTTAGATACAGGTGATGTGACTCCGACCTTAAACAACGAGCCTATCCCGGTGAAAAGAGACAAAGAAAAGCCCTCGATGAGCAAGGTACTTGGCACTCCAGGAAGTGATGTTGCTGTAAAAGCATCATCAATGTCTGGAGATTTGGATGACGAGACCACCACCTCCACCATCATCACCACAACTGTTATTACGACCATGCAGACTCCAGCTCCATGCAGCACCAATTTCACATCGCCGGGAGGCTACATAGAGACGCCACAGCAAGCCAGGAGTTGGTACAATACGAATGTGGACTGCACATACACCGTGACAGTCTACATGGGCTATGGGGTGGAAATTCAGGTGATGAACGTGAGCCTGGCTGAGGGTGACGTGGTCAGATTCGAAGACCTGGGTGGCAGAGAACCTTCCGTGCTGGCCAACGAGTCCATCTTGCTGAAAGGTCTGGTGGTACGCAGCTGGAGCAACCAAATCTCCATCCACTTCCGCAGCCGGCAGCCGCAGTCCAGCTCCTTGCTGCTGCGTTACCAAGCATTTGTCTTGAGTTGCAACTTCCCTGATAGACCAGCGTATGGGGATGTGTCCGTCACAAGCCTCCATGCAGGGGGAGAGGCCTATTTCTACTGCTTCAATGGATATCAACTCCAGGGTCCCTCCACCCTGACGTGCCGCAATGCCACCACACCCTACTGGACCGGCAAAGTGCCACGCTGTCTTGTGGCCTGCGGTGGAATGGTGAAGAACGCGACTCTCGGCCGCATTGTATCGCCTGGTTTCCCTGGCAACTACAGCAACAACTTGACCTGCCACTGGGTGCTGGAGGCCCCTGAGGGTCAACGGCTGCACGTGCACTTCGAGAAGGTGGCCCTCGCGGAAGATGATGACAGGTTTCTGATCAAAAATGGCAACCACATCGACTCGCCGATTCTGTATGACTCGTATGAGGTGGAATACCTTCCGAACGAGGGAATCGTTAGTTCCTCCAGACATTTTTTTGTGGAGTTTACGACGGATGGTTCCGGCACCAACACGGGGGTGGCCATTAGATATGAAGCTTTTGCAGCAGGGCACTGCTACGAGCCATTCGTCAAGTACGGCAACTTCACCACCACTGACAGCACCTATGCTGTGGGCACGGTTGTGGAGTTCACCTGTGACCCCGGCTACACCCTGGAGCAGGGTTCCGTTATCATCGAGTGCATGGATCCCAGCAATCCTCAATGGAATGAGACTGAACCCGCCTGCAGAGCTGTTTGCAGTGGAGAGATCACAGATTCAGCTGGGGTGGTGTTATCTCCAAACTGGCCCGAGGCCTATGATAAGGGTCAGGACTGCATCTGGGGGATCCATGTTGAAGAAGACAAGAGGATCATGCTTGACATCCAAGTTCTCCACATGGGAAAGAACGACCTGCTGACTTTCTACGACGGAGATGACCTGACTGCAAAAATACTGGGCCAGTACAGCGGTTCCCGTCCTCGCTTCAAACTCTACACCTCCATGGCTGATGTGACCATCCAGTTCCAGTCGGACCCTGCTACCAACATCTATGGCTACAACAACGGCTTTGTGGTGCACTTTTTTGAGGTTCCCCGTAATGACACCTGTCCAGAGCTTCCAGAGATCTCTAACGGCTGGAAAACCACATCTCACCCTGACCTTGTGCATGGCACGGTGGTGACCTATCAGTGTTACCCGGGCTTCGAGGTGGTGGGCACCGAAATGCTCATGTGTCAGTGGGACCTAACCTGGAGTGGAGACTTGCCCAGCTGTGAAAGAGTCCTGTCATGCCCAGACCCCGGCACAGTGGAGCACAGTCGCAGAGTGATGTCAGGTCCGCGTCTTATCGTGGGCTCTACTGTCCAGTACATCTGTAACAAAGGCTACTCACTGTCAGGAAACAGCCTCCTCTCATGCTACCATCGTGACTCCACCGGCCCCAAATGGAGCGAGAAGCTGCCCAAATGCATTCCTGATTCGTATGAGCCGTGTAGGAACCCCGGGACTCCCCCCTATACCATTCAGAGCTCTGAGAAGCATGCGTATCAGGCTGGAGAAACTCTGCGCTTCTCTTGCATGAGTGGGTATGAGCTCCAGGGTGAGCCTGTTCTCCGCTGTGTCCCCGGGCACCCTTCCAAATGGAGCCATCCACCTCCGCTGTGCAAAGCGGTAGCACAGGAGTACATCGATGAACGTAGGCTGGATGTGGCCAGTGCAGATTTCAGTATGGAGGGAGCCAGTGTGGCTGTTTCCATTTTCATCCCAGTGGCCGTTATCATAATTATCATTTTGTCAATATATTTCTACTTTTCAAGGGTGCAGGGGAAGTCTCTACGGCTGTCCATGTCCACATCACCACAATATGATCACATCAGAGGAGAGTCAGCTTTTGAAAACCCCATTTACGAGACC

Function

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU324239 lncRNA downstream 4482 2648535 ~ 2648989 (-) True G286099
TU324150 lncRNA downstream 81948 2571278 ~ 2571523 (-) True G286016
TU324214 lncRNA downstream 207871 2445183 ~ 2445600 (-) True G286080
TU324210 lncRNA downstream 250551 2402601 ~ 2402920 (-) True G286076
TU324208 lncRNA downstream 268712 2384549 ~ 2384759 (-) True G286074
TU324267 lncRNA upstream 116540 2875363 ~ 2875660 (-) True G286127
TU324268 lncRNA upstream 116858 2875681 ~ 2876025 (-) True G286128
TU324274 lncRNA upstream 142152 2900975 ~ 2901187 (-) True G286134
TU324275 lncRNA upstream 142928 2901751 ~ 2901991 (-) True G286135
TU324279 lncRNA upstream 147390 2906213 ~ 2906452 (-) True G286139
CI01000072_02633510_02645090.mRNA mRNA downstream 8079 2632837 ~ 2645392 (-) True CI01000072_02633510_02645090
CI01000072_02628853_02630214.mRNA mRNA downstream 23257 2628083 ~ 2630214 (-) True CI01000072_02628853_02630214
CI01000072_02617680_02621357.mRNA mRNA downstream 31937 2617309 ~ 2621534 (-) True CI01000072_02617680_02621357
CI01000072_02572648_02594029.mRNA mRNA downstream 59442 2572648 ~ 2594029 (-) True CI01000072_02572648_02594029
CI01000072_02561995_02567695.mRNA mRNA downstream 85114 2561440 ~ 2568357 (-) True CI01000072_02561995_02567695
CI01000072_02922504_03031111.mRNA mRNA upstream 163681 2922504 ~ 3031111 (-) True CI01000072_02922504_03031111
CI01000072_03049529_03055114.mRNA mRNA upstream 289179 3048002 ~ 3055582 (-) True CI01000072_03049529_03055114
CI01000072_03114079_03114839.mRNA mRNA upstream 354901 3113724 ~ 3114839 (-) True CI01000072_03114079_03114839
CI01000072_03144427_03154133.mRNA mRNA upstream 385495 3144318 ~ 3155095 (-) True CI01000072_03144427_03154133
CI01000072_03189624_03195527.mRNA mRNA upstream 430728 3189551 ~ 3195527 (-) True CI01000072_03189624_03195527
TU323875 other downstream 482813 2168048 ~ 2170658 (-) True G285752
TU323892 other downstream 645162 2005551 ~ 2008309 (-) True G285766
TU323812 other downstream 1025576 1602289 ~ 1602443 (-) True G285697
TU323815 other downstream 1025576 1594111 ~ 1627895 (-) True CI01000072_01596829_01610605
TU323625 other downstream 1298539 1335507 ~ 1354932 (-) True G285534
TU324139 other upstream 234946 2993769 ~ 2999495 (-) True G286005
TU324361 other upstream 1211447 3970270 ~ 3976002 (-) False G286205
TU324366 other upstream 1211447 3970270 ~ 3976067 (-) False G286205
TU324367 other upstream 1211447 3970270 ~ 3976002 (-) False G286205
TU324368 other upstream 1211447 3970270 ~ 3976002 (-) False G286205

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00017018 False 4310 mRNA 0.49 18 NC_007126.7 24212847 ~ 24544680 (+)
bowfin (Amia calva) AMCG00005535 True 801 mRNA 0.61 5 CM030142.1 4219881 ~ 4227690 (+)