RNA id: CI01000072_02922504_03031111.mRNA


Basic Information

Item Value
RNA id CI01000072_02922504_03031111.mRNA
length 6186
RNA type mRNA
GC content 0.53
exon number 40
gene id CI01000072_02922504_03031111
representative True

Chromosome Information

Item Value
chromosome id CI01000072
NCBI id null
chromosome length 5473029
location 2922504 ~ 3031111 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATGTTCAACTTGATCAAAAAAGACAAGGAGAAGGATGGAGTTAGGAAGGAGAAAAAGGACAAGAGAGATCGGAGGGAACGGATGTCTGCAGCTGAGCTCCGAAGCCTCGATGAGATGAGCATGAGGCGGGGATTCTTCAACCTCAACCGGAGCTCCAAGCGGGACTCCAAGAACAAGTTGGAGATCTCAAACCCGATCCCTATTAAAGTTGCCAGCAGCACTGAGCTCAACCTGACTGACATTGAGTCGGATGGCCTCAGTAACCGCAGCAGCATGGTCCTGGATGCAGATCAGCTCAGCGCGGCCAGCTCCAGTGATGATCTGAAGGGCGATTATGGTCAAGATGGCCATCGGAGCTCTGTCAAGGAGCGGGCAGCTAGGTTTGGCTCCCTCGCCATGCAAAACTCACAAATGGGTTCCATAATGAAGCGCTTCTCGTTTTCTCAGAGGAATAAAGATGAAAGTCCGTCCGAGGGTTCCACACCGTCTGGGCAGAACTCTGCTGCCCCTTCGCCACAGGTAGAAACCAAGATGTTTGACCCCCAACGAAAGCCAAGTCTACAACATCAGCAGCAGCAGCAGCAGCAGCAGCCTCCTACTGGGAAAAAGGTGCAGATTCCTGAGATTGTGGATAAGACGTTTCCTGCGGACCTCCGCTTGCCTGCTGTCGTGCCACCGCAGACGCCCGAAGTTCGGGAGCTGGTTCTCCAGAGGCGGAACACTGGAGATTTTGGGTTCTCCTTGCGGCGCACCACCATGTTGGATCGCGGCACGGATGGGACGGTATATCGCAGAGTAGTCCACTTTGCGGAGCCAGGTGCTGGCACCAAGGACCTGGCTCTTGGTTTGGTTCCCGGTGACAGGCTGGTGGAGATCAATGGGCGAAATGTGGAGAACAAGAGCAGGGATGAGATCGTGGAGATGATTCGGCAGTCAGGCGACACGGTTCGCCTTAAAGTTCAGCCCATTCTGGAGTTAAGCGAGCTGAGCCGATGCTGGCTGAGGAACACCGAAGGGCTGCGGCGGGAAGCATTTGACGTGAAAACAGAGGAGCAGATAGCTGCAGAGCAGGCATGGTATGGCTCGGAGAAAGTGTGGCTGGTCCACAAGGATGGATTCTCTCTGGCTACTGTGGTGAAGACGGAGACTGGCAGTCTACCAGAGGGGAAAGTGAAAATCAAACTGGAGCATGATGGGACAGTACTGGACGTGGACGAGGATGACGTAGAAAAGGCGAACCCGCCGTCATTTGACCGCTGTGAGGACTTGGCTGCTCTGCTCTATCTGAATGAGTCCAGTGTCATGCATTCTCTGCGCCAGCGCTATGGAGGAAACCTCATCCATACACATGCGGGGCCCAACATGGTGATCATCAACCCTATCAGCGCCCCCTCCATGTACTCAGAGAAGGTGATGCACATGTTCAAAGGCTGTCGACGGGAGGACACAGCCCCTCATATATATGCAGTGGCCCAATCTGCCTATCGAAACCTTCTGACAACAAGACAGGACCAGTCCATTGTTCTTCTGGGAAAGAGTGGCAGTGGCAAGACCACAAACTGCCAGCATTTAGTCCAGTACCTGGTGTCCATCGCCGGCAGCACCGGAAAGATTTTTACTGCTGAGAAATGGCAAGCGGTCTACACAATCCTAGAGGCCTTTGGAAACAGTGCCACCTCCATGAACAATAACGCAAGCCGCTTTTCCCAGATCGTCTCGCTGGATTTTGACCAGGCTGGTCAGGTGGCTTCTGCCTCAATCCAGACCATGCTGCTGGAGAAGCTGAGGGTGGTGAAACGACCAGAGACTGAGTCTACTTTTAATGTCTTTTACTACATGATGGCTGGAGCAGACAGCACACTCAGAACGGAGTTGCATTTTAACCACTTTGCAGAGAACAGTGCTTTTGGGATTGTGCCTCAATCTAAGCCTGAGGACAAGCAAAAGGCATCACAGCAGTTTACTAAACTGCAGGCGGCTATGAAGGTGCTGGGCATTTCCTCTGATGAACAGAAAGCTCTGTGGCTCATCCTTGGGGCCATATATCATCTTGGAGCTGCAGGGGCCACCAAAGCGGGCCGGAAGCAATTTGCACGTCATGAGTGGGCCCAAAAGGCGGCTTACCTCTTGGGTTGTACCCTCGAAGAGCTCTCATCTGCTATCTTCAAACACCAGCCCAAAGGATCCTTACAGAGATCCACCTCATTCCGCCAGGGACCAGATGATGTTGGGACAGGAGACAACTCGGCTCCAAAGATCACAGCTCTGGAGTGTCTGGAGGCCATGGCTGCTGGGCTCTACTCTGAGCTCTTTACTTTGGTCATCTCACTTGTTAACCGAGCACTGAAGTCGAGTCAGCATTCCCTGTGCTCTCTGCTAATTGTGGACACTCCGGGATTCCAGAACCCAAAGTTAGCAAAGCGTGACCGCGGTGCCACCTTCGAGGAGCTGTGCCACAACTACGCCCAGGAGCGTCTCCAAACGCTTTTTCACGAACGTACCTTTGTACAGGAGATGGAGCGCTACAAGGAGGAGAACATAGAGCTTGCATTAGATGACATAGAGTCCAGTACATCACTGTCTGTAGCAGCTATAGACCAAGCCTCAACTCAAGCATTGGTACGGACATTGGCCAGGACAGATGAGGCGAGAGGCCTGCTGTGGCTGATGGAGGAAGAAGCTCTGCAGCCTGGAGGCTCGGAGGAAACTCTGCTGGAAAGACTGTTCAGTTATTACAGCCCTGTGGATGGAGAGACCAAAGGCCCTGCCTTGCTGCTGAAGAGCGAAAAGGTACATCACTTCCTATTGGGTCACAGCCATGGGACTGACTGGGTGGAGTATGATGCTCGGGGATGGTTGAGCCATGCCAAACAGAACCCTGCCTCTCAGAATGCAGCCATTTTACTGCAGGACTCTCAGAAGAAGAATATCAGTAGCTTGTTTATGGGGCGTTCAGGAGGAGCCACAGTTTTGTCAGGTTCTATTGCTGGGCTTGAGGGCGGATCACAGCTGGCCCTGCGCAGGGCCACAAGCATGAGGAAGACCTTCACCACTGGCGTGGCTGCTGTTAAAAAGAAGTCCCTCTGCATCCAGATTAAACTACAAGTGGATGCACTAATAGACACAGTGAGGCGGTCCAGGGTGCACTTTGTTCATTGTCTGCTGCCTAAAGCAGAGACTTTGACTGGGGATGTGAAGGTGCTAGGAGGACCCTCGCCTCGCTCTGGGGAGATTGAGGCACATGGAGAAAGCTGTGACAATGGCCTCATGCAGCTGGATGTGTGCTTGCTCCGGGCACAGCTCCGTGGCTCCAAACTGCTCGACGCACTCCGTATCTACCGCCAAGGTTATCCTGATCATTTGGTCTTTTCGGAGTTCCGCCGCCGCTTTGATGTACTGACTCCCCACTTGACGAAGAAACATGGGCGGAACTACATTGTAACTGATGAGAAAAGGGCTGTCGAAGAGCTGCTGGAGTCCCTTGAGCTGGAAAAAAGCAGCTATCACATGGGCTTGAGTAGGGTGTTTTTCAGAGCAGGTGTTTTGCCTAAGCTGGAGGAGCACAGAGATATCCAGACCAGACGCAACATAACCTTGTTTCAGGCTGCGTGCAGAGGTTACCTAGCCCGACAGGCCTTCAAGAAGAGGAAGATCCAGGACTTGGCAATCCGCTGCATCCAGAAAAACATCAAGAAGAACCGGGGTGTGAAGGGCTGGCCGTGGTGGAAGCTTTTCACCACCGTTCGTCCGCTCATCGAGGTTCAGCTGACTGAGGAGCAGATCCGCGGCAAAGACGAGGAAATTCAGCAGCTCAAGTTGAGGCTGGAGAAAGTGGAGAAGGAAAGGAATGAATTGAGACTCAATAGTGACCGACTGGAAAGCAAGATCACAGAACTGTCATCAGAGCTTGCCGATGAGCGCAACACAGGCGAGTCTGCCTCGCAGCTGCTGGAGTCCGAGACCTCGGAGAGACTGAGGCTAGAGAAAGACATGAAGGATCTACAGGCCAAGTTTGACGCTATGAAGAAGCAGATGGAGTCTATGGAGATGGAAGTGATGGAGGCACGGCTTATACGTGCATCGGAGCTCAACGGGGAAATGGACGACGATGACACCGGAGGAGAATGGAGGCTCAAGTATGAGAGGGCCATCAGAGAGATCGAGTTTACCAAGAAGAGACTCCAACAAGAGTTTGATGACAAACTAGAGGTGGAACAGCAAAACAAGAGGCAGCTGGAGAGAAAGCTGACAGACCTGCAGGCGGACAATGAAGAGGTGCAGCGTGTGGCTCAGCAGCTGAAGAAGAAATGCCAGAGACTGACAGCCGAGCTACAGGACACCAAACTGCACCTGGAGGGGCAGCAGAGCCGCAACCACGACCTGGAGAAGAAACAGCGCAAGTTTGACTCTGAGCAGACTCAGGCTCAGGAGGAGGTGCAGAGAGAAAAGAGTCAGCGGGAGAAGCTGAGCAGAGAGAAAGACATGCTGACCGGGGAAGTGTTCAGCCTTAGACAACAACTTGAGGATAAAGATCTGGAGATATGTGCTGTCAATCTGAAGCTTGAGCAATTGGAGGCGGAACTTCAAGATCTGAACTCACAGGAGTCAAAGGACGAGGCGTCATTGGCCAAGGTTAAAAAGCAGCTTCGTGACCTTGAGGCAAAGGTCAAAGATCAAGAAGAAGAACTCGATGAGCAGGCTGGAACCATTCAGATGCTGGAGCAGGCCAAGCTCCGTCTGGAGATGGAGATGGAGAGACTGAGACAGACGCATTCGAAAGAGATTGAGAGCAAAGACGACGAGGTGGAGGAGATCAGACAGTCCTGCAGCAAGAAGCTCAAGCAAATGGAGGTGCAGCTGGAGGAGGAGTATGAAGACAAGCAGAAGGTTTTACGGGAGAGGAGAGACCTGGAAGCCAAGCTGATGAGCGCCCAGGAGCAGGTTAGCCACAGAGATGTTGAGACAGAGAAGCGTCTGAGGAAGGACCTGAAGCGCACAAAGGCCTTGCTGGCTGATGCCCAGATCATGCTGGATCACCTGAAGAACAACGCTCCCAGCAAGAGAGAGATCGCTCAACTCAAGAACCAGCTCGAGGAATCAGAGTTCACATGCGCTGCTGCAGTCAAAGCCAGAAAGTCAATGGAAGTAGAGATCGAGGACCTCCATGTCCAAATGGATGACATATCCAAATCCAAGCAGACGCTTGAGGAACAGCTGAGTCGTTTGCAGAGGGAGAAGAATGACCTACAGTCTCGCATGGAGGAGGACCAGGAGGACATGAATGAACTCATGAAGAAACACAAAGCCGCCGTTGCCCAGTCCTCACAGAACCTGGCCCAGATCAGTGACCTGCAAGCCCAGCTGGAGGAGGCCATGAAGGAGAAACAGGATGTCCAGGAGAAGCTCACGGCCCTGCAGAGTCAGCTAGAGTTCCAAGAGCAGTCCATGGTGGACAAGTCTCTGGTCAGCCGGCAGGAGGCCAAGATCCGTGAGCTGGAGACCAAGCTGGAGTTCGAGAAGACACAGGTCAAACGCTTGGAGAGTCTTGTAGCGAGGCTGAAAGAGAATCTTGAGAAGTTGACTGAGGAGCGAGACCAACGCAGTGCCAGCGAGAACCGGGAGAAAGAGCAGAACAAGCGTCTCCTCAGGCAGATTCGAGACACCAAGGAGGAGATGGCCGAGCTGGCCAAGAAGGAAGCGGAAGCCAGCCGCAAAAAACACGAGCTGGAAATGGATATTGAGAGTTTGGAAGCAGCCAACCAGAGTCTCCAGGCGGACCTCAAGCTGGCCTTCAAGAGGATCGGAGATCTCCAGGCTGCTATCGAGGATGAGATGGAGAGTGACGACAATGAGGATCTCATCAACAGTTTACAAGACATGGTGACTAAGTATCAGAAACGAAAGAACAAGCTCGAGGGTGCCTCCGATACCGATTCTGAGGTGGAGGACCGTGTTGATGGGGTAAAGTCATGGCTGTCCAAAAACAAGGGCTCTGCCAAAAACCTGTCAGATGATGGTAGTCTGAAGAGCTCAAGCCCTCACTCCACCTCTGGTCGAAGCTTCTCCATGCCTCCGCAAGCCCGGAATACTGACTCCAGCCCGCCTGACGTCTCAGACGTCAAACCAGTCAGTCACCGCAACTACCTGGACCCTGACCTGGAGGCTGCCATCAATGAAGTATTGAGC

Function

GO:

id name namespace
GO:0003779 actin binding molecular_function

KEGG:

id description
K10362 MYO18; myosin XVIII

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU324280 lncRNA downstream 14710 2907422 ~ 2907794 (-) False G286140
TU324282 lncRNA downstream 14801 2907354 ~ 2907703 (-) False G286140
TU324283 lncRNA downstream 14801 2907422 ~ 2907703 (-) True G286140
TU324279 lncRNA downstream 16052 2906213 ~ 2906452 (-) True G286139
TU324275 lncRNA downstream 20513 2901751 ~ 2901991 (-) True G286135
TU324287 lncRNA upstream 3176 3034287 ~ 3034608 (-) True G286142
TU324291 lncRNA upstream 24880 3055991 ~ 3072797 (-) True G286144
TU324314 lncRNA upstream 72619 3103730 ~ 3104264 (-) True G286166
TU324321 lncRNA upstream 88650 3119761 ~ 3120001 (-) True G286172
TU324160 lncRNA upstream 88986 3120097 ~ 3121269 (-) True G286026
CI01000072_02653471_02758823.mRNA mRNA downstream 163681 2653471 ~ 2758823 (-) True CI01000072_02653471_02758823
CI01000072_02633510_02645090.mRNA mRNA downstream 277112 2632837 ~ 2645392 (-) True CI01000072_02633510_02645090
CI01000072_02628853_02630214.mRNA mRNA downstream 292290 2628083 ~ 2630214 (-) True CI01000072_02628853_02630214
CI01000072_02617680_02621357.mRNA mRNA downstream 300970 2617309 ~ 2621534 (-) True CI01000072_02617680_02621357
CI01000072_02572648_02594029.mRNA mRNA downstream 328475 2572648 ~ 2594029 (-) True CI01000072_02572648_02594029
CI01000072_03049529_03055114.mRNA mRNA upstream 16891 3048002 ~ 3055582 (-) True CI01000072_03049529_03055114
CI01000072_03114079_03114839.mRNA mRNA upstream 82613 3113724 ~ 3114839 (-) True CI01000072_03114079_03114839
CI01000072_03144427_03154133.mRNA mRNA upstream 113207 3144318 ~ 3155095 (-) True CI01000072_03144427_03154133
CI01000072_03189624_03195527.mRNA mRNA upstream 158440 3189551 ~ 3195527 (-) True CI01000072_03189624_03195527
CI01000072_03210624_03244667.mRNA mRNA upstream 179108 3210219 ~ 3244667 (-) True CI01000072_03210624_03244667
TU323875 other downstream 751846 2168048 ~ 2170658 (-) True G285752
TU323892 other downstream 914195 2005551 ~ 2008309 (-) True G285766
TU323812 other downstream 1294609 1602289 ~ 1602443 (-) True G285697
TU323815 other downstream 1294609 1594111 ~ 1627895 (-) True CI01000072_01596829_01610605
TU323625 other downstream 1567572 1335507 ~ 1354932 (-) True G285534
TU324361 other upstream 939159 3970270 ~ 3976002 (-) False G286205
TU324366 other upstream 939159 3970270 ~ 3976067 (-) False G286205
TU324367 other upstream 939159 3970270 ~ 3976002 (-) False G286205
TU324368 other upstream 939159 3970270 ~ 3976002 (-) False G286205
TU325381 other upstream 1355034 4386145 ~ 4394223 (-) True G287021

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00017014 False 7530 mRNA 0.52 41 NC_007126.7 23951560 ~ 24116213 (+)
bowfin (Amia calva) AMCG00005567 True 11211 mRNA 0.53 45 CM030142.1 3918356 ~ 3993279 (+)