RNA id: CI01000072_03210624_03244667.mRNA


Basic Information

Item Value
RNA id CI01000072_03210624_03244667.mRNA
length 3357
RNA type mRNA
GC content 0.52
exon number 22
gene id CI01000072_03210624_03244667
representative True

Chromosome Information

Item Value
chromosome id CI01000072
NCBI id null
chromosome length 5473029
location 3210219 ~ 3244667 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATGCCAAATGCTAAGCTTCATAGGACAGGACAGGACATAGACCCCTTAAAATGGGTTTTGGGACAAGATGCTTTCTTCCCCCATCTAAACCATCTATTTCAGTGGCATATTGCTTTCACTGAGAAACCTTCTTCATCGACACCCCTGCCCCCACATTCTCATATAAATTGCAAGGGCAATCAGACAGAGAGCAGCAGTGGAACAATCAATGTGTGTGGCTTGGACAGGGTGGGGCAGTGGGTGGTGGTGGAGGAGGATGGGTGGGTGACAGACGATGAGGTCTATGTCAGCATAAAATGGCATGCCTCTCTCTTAGCCAGTCGTTCAGAGAAGGGCTCGGGATGGTCGAGTCGCTCGCTCGGAGCCCGTTGCCGGAATTCCATCGCCTCCTGCTCGGACGAACAGCCTCACATCGGCAACTACCGGCTGCTCAAGACCATCGGCAAGGGCAATTTTGCCAAAGTGAAGTTGGCACGCCATATTTTGACCGGCAGGGAGGTTGCAATAAAAATTATTGACAAAACCCAACTCAACCCTACAAGCCTACAAAAGATGGAGGGGGGCAGAGCACAATCAGCTGACCATGAACTTTCCCAGCAGCTGGATTTCAGAAGGGCTGGGAAAGACATGGAATTTGCCTTTAACAACGTGTGTGTGTGTGAGAGAGGGTTGGAGACATGCAAAAATGTCAAGCCTCCGATTTGCATATTTCACCCCCTCTCTGTGGAGCAGTTGGAGACGGCTCCCAGCACAAGGCCTGGATTAACTGGTGAGAGGCCTGCAGTGGGGTCAAGCACCACCAACATGACCTCATTCACCCACAATGCCATCCAGAGGGAAACCGAGAAGGAAAAGAGATCTTTTGTAAGCAAATTCTTCTGTCTTAAAGAAGAAAAAAGGAAGATCATCTACTCAGGGTTTGATTACCACTGTCTGGAAAACTGCATTAGCTATAGTACCTTTGAGTTTGAAATGAAGTTTTCGACTTCTTTTGAAAATGAAAAAATCAAAATTGCATTTCTGTTTCATAATTTCTGTCCGAATCTCTTTCGAGAGGTACGGATCATGAAGGGCCTCAACCACCCAAACATAGTTCAACTCTTTGAAGTGATCGAGACGGAGAAGACATTGTACCTTGTGATGGAATACGCCAGTGGAGGTGAAGTATTTGACTACCTCGTATCTCATGGGAGAATGAAGGAAAAGGAGGCACGTGCTAAATTCCGGCAGGCGGAAAACCTCCTGCTTGATGCAGACTCCAACATCAAGATTGCTGACTTTGGCTTCAGTAATGAATTTACGCTGGGCAGTAAACTGGACACGTTCTGCGGCAGTCCTCCCTATGCCGCCCCAGAGCTCTTTCAGGGGAAAAAGTATGATGGGCCAGAGGTTGACATTTGGAGTCTGGGGGTTATCCTCTACACGCTGGTCAGCGGATCACTGCCCTTTGATGGACAGAACCTCAAGGAGCTGCGTGAGCGTGTGTTGAGGGGGAAATACCGGGTGCCATTCTACATGTCCACCGACTGTGAGAGCATCCTGCGCCGGTTTCTTGTGCTCAACCCCACGAAGCGCTGCACCCTGGAGCAAATCATGAAGGATAAGTGGATGAATATCGGGTATGAAAGTGATGAGCTGAAGCCTCATATAGAGCCGGTGGAGGACTATAATGATGGCAGCCGTATCGATGTAATGGTGGGAATGGGTTACTCCCGTGATGAAATCAAAGATGCCCTAACCACGCAGAAGTACAATGAGATATTTGCCACGTATCTGTTGCTAGGTCGCAAGAATGAGGATGGCATAGAGACCCGGTCGAGCAGCAGTCTGTCTCTAGCACGGGTGCGGCCCAGTCCCATCACGAATGGCACCAGCAAACACTCCTCCACCTCCTCCTCCAGCTCCACCTCTGCCACCAGTCACAATAAACCCCAGCGCAGTGCCTCCACCTACCACCGCCAGAGGAGGCACAGTGACTTCTGTGGGCCATCAGTGCCAGTAACCCACCCCAAGCGCAGCCCCACCAGTACAGGAGAGGGGGATCTAAAAGAGGAACGTCTTCCCTCAAGGAAGGCCAGCTGCAGTGTGGTGGGCAGTCGAAGCATCCCCCCTTCGAGCCCCATGGTCAGCACAGCCAACAACCCCAACAAGGCTGAGATCCCTGACCGCCGCAAGGACATCAATGTGACAACGAATAATATCCCTGCTAGTGCCATGACCCGTAGGAACACTTATGTATGTACGGACCGCACCAACACAGACAGACACACCTTACTACAGAATGGGAAAGAGAACAGCTCCTTGTCACATCGATTACCTCCAGCCTCCCCGTCCACCCACAGCATCTCCGGGGCCGGTGCCTCCGGCTCCACATCATCCGAACGTTCTCGGTTGACAAGGGGATCCACCATCCGCAGCACCTTCCACGGTGGCCAGCTAAGGGACCATCGGCCTCCTACCCACGCACCCCCCACCTCACCCACCCTCTCCCACGAAGCCAGCCCTCTGCCACACTCCCGTAGCCGTGCCACCACAAACCTGTTCACTAAGCTGACCTCAAAACTTACCCGCAGGGTCACAGACGAACCTGAGAGAGTCTGCAGATCTCCGGTCACAAGTCGCTATCTATCTGGGTATCAAAAAGCGGCAGAGCCCCGGACCCCCCGATGCGGCTGGGATTTGAGGGTGCGGAGCCCGCGGGACCCGGCCGAGGTGGTTCTGGCGTTGCGGGAGGCGGCGCAGGGCTGTGGTTGCCAGGTCCACCAGGCCGGGCCCTTCCTCCTCTCCTGCACCCATGGAGCCGCTGGATCCCGCGTTGCCTTCGAAGCAGAGGTTTGCCAGCTGCCCAATGGCCCCGCAGAGACCAGCGGTGTTCGATTTAAGCGCCTGTGGGGGGCACCGCTTGCCTTTCGGGACATTGCCACCAAAGTGTCCAAAGAACTCGAACTCTGAGGGCAACAGGGGGTGGAGGGCAGGGACAAAAGAATGGGACAGAAAGATGGGATGATTGGAAGTAGCCCCGCCCACACCCCCGCCCCCTCTAAGCCTACAAAGACTGGCACACACACATTGAGAACTGGGCACCTGCTCACACAAAAGCCCTGCTGAAGGAACTCCCTTTACCTGGGTCTGTTTTTCCGCTGATTTTACCTGGTATCTTAGCCATGTTGTTTTATAACACAGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCGTGTTCACTCTGTACATTGTCAATCCTTTTTAACTGCTGCTATTTAACTCATTTTTTGTTTTCTATTCTTCTGCTGTGCTGGCGAGAAGAGTATGTTTTATTTTATCCTCATTTCAGTAACCATATTCACAATAAA

Function

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process

KEGG:

id description
K08798 MARK; MAP/microtubule affinity-regulating kinase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU324337 lncRNA downstream 31340 3177534 ~ 3178879 (-) True G286186
TU324331 lncRNA downstream 40737 3169263 ~ 3169482 (-) True G286182
TU324322 lncRNA downstream 84658 3125336 ~ 3125561 (-) True G286173
TU324160 lncRNA downstream 88950 3120097 ~ 3121269 (-) True G286026
TU324321 lncRNA downstream 90218 3119761 ~ 3120001 (-) True G286172
TU324456 lncRNA upstream 64541 3309208 ~ 3309424 (-) True G286266
TU324416 lncRNA upstream 102860 3347527 ~ 3347813 (-) True G286227
TU324464 lncRNA upstream 106798 3351465 ~ 3351757 (-) True G286272
TU324465 lncRNA upstream 107114 3351781 ~ 3352495 (-) True G286273
TU324468 lncRNA upstream 109358 3354025 ~ 3354567 (-) True G286276
CI01000072_03189624_03195527.mRNA mRNA downstream 14692 3189551 ~ 3195527 (-) True CI01000072_03189624_03195527
CI01000072_03144427_03154133.mRNA mRNA downstream 55124 3144318 ~ 3155095 (-) True CI01000072_03144427_03154133
CI01000072_03114079_03114839.mRNA mRNA downstream 95380 3113724 ~ 3114839 (-) True CI01000072_03114079_03114839
CI01000072_03049529_03055114.mRNA mRNA downstream 154637 3048002 ~ 3055582 (-) True CI01000072_03049529_03055114
CI01000072_02922504_03031111.mRNA mRNA downstream 179108 2922504 ~ 3031111 (-) True CI01000072_02922504_03031111
CI01000072_03270542_03289988.mRNA mRNA upstream 25812 3270479 ~ 3290190 (-) True CI01000072_03270542_03289988
CI01000072_03330998_03335358.mRNA mRNA upstream 86150 3330817 ~ 3335358 (-) True CI01000072_03330998_03335358
CI01000072_03379532_03381460.mRNA mRNA upstream 134656 3379323 ~ 3382542 (-) True CI01000072_03379532_03381460
CI01000072_03396929_03398233.mRNA mRNA upstream 151980 3396647 ~ 3399019 (-) True CI01000072_03396929_03398233
CI01000072_03455112_03462887.mRNA mRNA upstream 210004 3454671 ~ 3462887 (-) True CI01000072_03455112_03462887
TU324139 other downstream 210724 2993769 ~ 2999495 (-) True G286005
TU323875 other downstream 1039561 2168048 ~ 2170658 (-) True G285752
TU323892 other downstream 1201910 2005551 ~ 2008309 (-) True G285766
TU323812 other downstream 1582324 1602289 ~ 1602443 (-) True G285697
TU324361 other upstream 725603 3970270 ~ 3976002 (-) False G286205
TU324366 other upstream 725603 3970270 ~ 3976067 (-) False G286205
TU324367 other upstream 725603 3970270 ~ 3976002 (-) False G286205
TU324368 other upstream 725603 3970270 ~ 3976002 (-) False G286205
TU325381 other upstream 1141478 4386145 ~ 4394223 (-) True G287021

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00017003 False 4169 mRNA 0.51 18 NC_007126.7 23550967 ~ 23641516 (+)
bowfin (Amia calva) AMCG00013592 True 1923 mRNA 0.59 14 CM030125.1 37175701 ~ 37191635 (-)