RNA id: CI01000072_03189624_03195527.mRNA


Basic Information

Item Value
RNA id CI01000072_03189624_03195527.mRNA
length 1516
RNA type mRNA
GC content 0.52
exon number 10
gene id CI01000072_03189624_03195527
representative True

Chromosome Information

Item Value
chromosome id CI01000072
NCBI id null
chromosome length 5473029
location 3189551 ~ 3195527 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GTACTGAGATCAGACATGTTGTCAGGGGAGGAAATCTTATGCAGCACCCAGCAGGTGATCGCAGGGCTGGAGGCTTTGCGTGGAGAGAACCGCACGCTGCTGGACAGCCTGCAGGAAACGCTCCAGAGCCAGACGTCCAGCGAGAGCGGCAGCCTGGAGCAGGAGAAGACCAGCATAATTTTAGAGTCTCTGGAGAGGATTGAGCTGGGCTTAGGAGAGGCACAAGTAATGATGGCGCTGTCAGCACACCTGGGCTCCTTGGAGGCAGAGAAGCAGAAGTTGCGTGCTCAAGTGCGGAGGTTGTGCCAAGAGAACCAGTGGCTGAGGGATGAGCTGGCCCGGGCCCAGCAGCAGCTACAGGAGCGAGAACAGGAAGTGGTTACTTTAGAGGAGCAGAACAGACACCTGCAGTTCATGAGCAGCATCCGCAAGTACGACCACGAAGAGCAGTCTCTGGAGGATAAAGATGCTTCTTCAGGGAAGGAGTCCCTTGATGATCTCTTTCCTACTGAAGAAGAGGAGCAATCACACAGTACATCACTCCTCACAGCTGTTCCTTCACACATTTGTTTTCAGAGTTTTTGCCATGTCAGCTGTTGGGATAGACAAGGAGGATATGAGATCCCTGCCCGACTCCGAACGCTCCACAACCTGGTGATCCAATACGCCTCTCAGGGCCGCTATGAGGTGGCCGTGCCGCTCTGCAAGCAAGCTCTGGAGGACCTGGAGAAATCCTCGGGCCACAGCCACCCAGATGTTGCCACCATGCTCAATATCCTGGCTTTAGTGTACAGGGATCAGAACAAATATAAGGAAGCTGCCAATCTCCTGAATGATGCATTGGCCATCCGTGAGAAGACGCTAGGCATGGACCATCCAGCTGTGGCCGCTACTCTGAATAATCTGGCCGTGTTGTATGGAAAAAGGGGAAAGTACAAAGAGGCAGAGCCACTGTGTAAAAGAGCTCTGGAGATCAGAGAAAAGGTGCTTGGGTTGGATCACCCTGATGTAGCCAAGCAGCTGAATAACTTAGCCCTCCTTTGCCAGAACCAGGGCAAATACCAGGAGGTGGAGCAGTACTATGAACGTGCCCTGCACATTTACCAGAGCCAGCTGGGTCCTGACGATGCCAATGTCGCCAAGACGAAGAACAACCTGGATGGTCTGGGAAGTCTGAAGCGCAGCGGATCATTTACCAAGCTCCGGGAATCCATAAGACGAAGCAGTGAAAAACTTGTTCGGAAGCTGAAAGGAGTTGGAACACAAGAAACGACCCCTCGAACTGCTGGGATGAAGAGAGCCAATTCTCTCAATGTGCTTAATGTGGGTCTTAAAGAGAATCAAGAGGCTGCTATGAACCCCAATAGGCTGACAGACACACGGGGTCTAAGTTCCAGCACGCAGATTTTAGCCCGCCGCGCGTCTCTGGGTGGAGACAGCTAACCTTCAGCCACACCATATGACATCAGGACTGTAATGGTCTGTAATTACTGCAGAGATCATATTTGACAATAAT

Function

GO:

id name namespace
GO:0005871 kinesin complex cellular_component

KEGG:

id description
K10407 KLC; kinesin light chain

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU324337 lncRNA downstream 10672 3177534 ~ 3178879 (-) True G286186
TU324331 lncRNA downstream 20069 3169263 ~ 3169482 (-) True G286182
TU324322 lncRNA downstream 63990 3125336 ~ 3125561 (-) True G286173
TU324160 lncRNA downstream 68282 3120097 ~ 3121269 (-) True G286026
TU324321 lncRNA downstream 69550 3119761 ~ 3120001 (-) True G286172
TU324456 lncRNA upstream 113681 3309208 ~ 3309424 (-) True G286266
TU324416 lncRNA upstream 152000 3347527 ~ 3347813 (-) True G286227
TU324464 lncRNA upstream 155938 3351465 ~ 3351757 (-) True G286272
TU324465 lncRNA upstream 156254 3351781 ~ 3352495 (-) True G286273
TU324468 lncRNA upstream 158498 3354025 ~ 3354567 (-) True G286276
CI01000072_03144427_03154133.mRNA mRNA downstream 34456 3144318 ~ 3155095 (-) True CI01000072_03144427_03154133
CI01000072_03114079_03114839.mRNA mRNA downstream 74712 3113724 ~ 3114839 (-) True CI01000072_03114079_03114839
CI01000072_03049529_03055114.mRNA mRNA downstream 133969 3048002 ~ 3055582 (-) True CI01000072_03049529_03055114
CI01000072_02922504_03031111.mRNA mRNA downstream 158440 2922504 ~ 3031111 (-) True CI01000072_02922504_03031111
CI01000072_02653471_02758823.mRNA mRNA downstream 430728 2653471 ~ 2758823 (-) True CI01000072_02653471_02758823
CI01000072_03210624_03244667.mRNA mRNA upstream 14692 3210219 ~ 3244667 (-) True CI01000072_03210624_03244667
CI01000072_03270542_03289988.mRNA mRNA upstream 74952 3270479 ~ 3290190 (-) True CI01000072_03270542_03289988
CI01000072_03330998_03335358.mRNA mRNA upstream 135290 3330817 ~ 3335358 (-) True CI01000072_03330998_03335358
CI01000072_03379532_03381460.mRNA mRNA upstream 183796 3379323 ~ 3382542 (-) True CI01000072_03379532_03381460
CI01000072_03396929_03398233.mRNA mRNA upstream 201120 3396647 ~ 3399019 (-) True CI01000072_03396929_03398233
TU324139 other downstream 190056 2993769 ~ 2999495 (-) True G286005
TU323875 other downstream 1018893 2168048 ~ 2170658 (-) True G285752
TU323892 other downstream 1181242 2005551 ~ 2008309 (-) True G285766
TU323812 other downstream 1561656 1602289 ~ 1602443 (-) True G285697
TU324361 other upstream 774743 3970270 ~ 3976002 (-) False G286205
TU324366 other upstream 774743 3970270 ~ 3976067 (-) False G286205
TU324367 other upstream 774743 3970270 ~ 3976002 (-) False G286205
TU324368 other upstream 774743 3970270 ~ 3976002 (-) False G286205
TU325381 other upstream 1190618 4386145 ~ 4394223 (-) True G287021

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00017005 True 1971 mRNA 0.51 14 NC_007126.7 23657051 ~ 23677446 (+)
bowfin (Amia calva) AMCG00013590 True 1524 mRNA 0.59 12 CM030125.1 37139369 ~ 37151861 (-)