RNA id: TU324279


Basic Information

Item Value
RNA id TU324279
length 240
lncRNA type inter_gene
GC content 0.35
exon number 1
gene id G286139
representative True

Chromosome Information

Item Value
chromosome id CI01000072
NCBI id null
chromosome length 5473029
location 2906213 ~ 2906452 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CCGATTTTCTCATTGAAGAAATTCATAAAGTCATTACTAAATGATAAATGAAGAAAAAATAAGCAAGAGTAAAATATATGACAGCTCCAAATAAAACTACAATTCATTTCGTTTTTTGTTCAAGATGAAAGGATGTGTTGCTTATATGATGCATCATGCATCCTCAGTCAAGGACAAGACCGTATCACAGACAGGCAGGTTTGAGCTTAAATTAAACCCCCTGTCCAATCTGGCCAGTCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU324275 lncRNA downstream 4222 2901751 ~ 2901991 (-) True G286135
TU324274 lncRNA downstream 5026 2900975 ~ 2901187 (-) True G286134
TU324268 lncRNA downstream 30188 2875681 ~ 2876025 (-) True G286128
TU324267 lncRNA downstream 30553 2875363 ~ 2875660 (-) True G286127
TU324245 lncRNA downstream 229340 2674712 ~ 2676873 (-) True G286105
TU324282 lncRNA upstream 902 2907354 ~ 2907703 (-) False G286140
TU324280 lncRNA upstream 970 2907422 ~ 2907794 (-) False G286140
TU324283 lncRNA upstream 970 2907422 ~ 2907703 (-) True G286140
TU324132 lncRNA upstream 93286 2999738 ~ 3009578 (-) True G285998
TU324287 lncRNA upstream 127835 3034287 ~ 3034608 (-) True G286142
CI01000072_02653471_02758823.mRNA mRNA downstream 147390 2653471 ~ 2758823 (-) True CI01000072_02653471_02758823
CI01000072_02633510_02645090.mRNA mRNA downstream 260821 2632837 ~ 2645392 (-) True CI01000072_02633510_02645090
CI01000072_02628853_02630214.mRNA mRNA downstream 275999 2628083 ~ 2630214 (-) True CI01000072_02628853_02630214
CI01000072_02617680_02621357.mRNA mRNA downstream 284679 2617309 ~ 2621534 (-) True CI01000072_02617680_02621357
CI01000072_02572648_02594029.mRNA mRNA downstream 312184 2572648 ~ 2594029 (-) True CI01000072_02572648_02594029
CI01000072_02922504_03031111.mRNA mRNA upstream 16052 2922504 ~ 3031111 (-) True CI01000072_02922504_03031111
CI01000072_03049529_03055114.mRNA mRNA upstream 141550 3048002 ~ 3055582 (-) True CI01000072_03049529_03055114
CI01000072_03114079_03114839.mRNA mRNA upstream 207272 3113724 ~ 3114839 (-) True CI01000072_03114079_03114839
CI01000072_03144427_03154133.mRNA mRNA upstream 237866 3144318 ~ 3155095 (-) True CI01000072_03144427_03154133
CI01000072_03189624_03195527.mRNA mRNA upstream 283099 3189551 ~ 3195527 (-) True CI01000072_03189624_03195527
TU323875 other downstream 735555 2168048 ~ 2170658 (-) True G285752
TU323892 other downstream 897904 2005551 ~ 2008309 (-) True G285766
TU323812 other downstream 1278318 1602289 ~ 1602443 (-) True G285697
TU323815 other downstream 1278318 1594111 ~ 1627895 (-) True CI01000072_01596829_01610605
TU323625 other downstream 1551281 1335507 ~ 1354932 (-) True G285534
TU324139 other upstream 87317 2993769 ~ 2999495 (-) True G286005
TU324361 other upstream 1063818 3970270 ~ 3976002 (-) False G286205
TU324366 other upstream 1063818 3970270 ~ 3976067 (-) False G286205
TU324367 other upstream 1063818 3970270 ~ 3976002 (-) False G286205
TU324368 other upstream 1063818 3970270 ~ 3976002 (-) False G286205

Expression Profile