RNA id: CI01000072_02617680_02621357.mRNA


Basic Information

Item Value
RNA id CI01000072_02617680_02621357.mRNA
length 1694
RNA type mRNA
GC content 0.46
exon number 6
gene id CI01000072_02617680_02621357
representative True

Chromosome Information

Item Value
chromosome id CI01000072
NCBI id null
chromosome length 5473029
location 2617309 ~ 2621534 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ACAGAGAGGCTGTGCTTCAATTTGGTAATGTCGGTGACAGCCCTTTACATCCTACTATTACCTTCCTCATCACAGGTAAACAAAAGTCATTAGAAGATGTAAAATTATTATTTCCTTTCCTCTTTAAATAATATACTGTGTTCATTTGTTGTGTCTCATGAAGGCTCTAAAGTGGATATGAGGCGTTATTTGGAGGGAGATGAGGATGCACTACAATGTGAGATTCGTAGATACAGCACTGGAGGGATTGTGCTGCGCTGGCCTATTACAGGAGCGCAAGATCATGACGTCTGGTTCACCTGCACGATTCGCCATACAAAAGGCTTGTTCATAATCACCACCTTCCTCAGACACACACCTGCAACTCCTGCCCAAGGACAGGTGGACTATCTTCAATGGATAACAGTTAATGACAGGGATCTCCTGACAACATCAGCTGCGATGGTTGTTTTGACCCGGACACCCTCTGTGGAGGTGGGATTCTTGAAGGAGCCAAACCTGCACTGTCAGTTTGCAGTGGATCATAAACTTCCTAATACAACAGTGGAGTGGAGACTGCAGCGACACGGGGAGCGCAGCAAACTCTTTAGCTATTCCAGCCGCACAGGGAAGAGTGAAGGCAGCGGAGTGGCTGTCAAGGCCATTGCCGCTGGAAACATCTCCTTCAAACTTCCACCCACTAGAAAACTCAGTGAGGGCACATATATCTGCTCTGTGATGGTTCCTCCTCTCTACGGCAGCCATGATATTCCCCTTACCCTAAGTGAACAACCCCGTGTGTCTCTGAACGTGGGCTCTATCTTGTCTATAACACTCGGTACGGACCAGAAGCTAATATGCGATGCAGAGGGGTACTATCCTCTGGATGTAAACATTGAGTGGTACCGTGAACCGGTCGGGGGCAGCCCTACACCTTTGTTCCTGAAGAATGTTCTGTATTCAAGTCATCGCCTTCATCAAGATGGCACATACTCGCTCTCAGCCTTCTTCCTTCTGCAGCCTACCATGGAGGACTCTGGATATAAGTACACGTGCAGAGTTTCCCATAAATCCTTGCTCACTCCCATCCGCAAAAGCTTTAGCCTCATAGTTACAGAACCTGACTCTACCATGTGGTATGTCACAGTCATTGGATTTATAATTTCCATGCTAGTAATTCTTTGTTATGTGCTGCCACAGTTTCTTGCAGGACGAAAAGCAGCAAAAAAGCTACAATGTCTTCAAATGCACAATGGAGCCATTATAAGGAACCTTATATGTGAATTCAGAATCCTTAGACTCATTAGTAGTCTTATTGTGTTTGCGATGACGGAGAAAAAGTAGTGTTTGTTTTATCTCAATGTTTATCCTGTGGTGATGCTCGTTGGGCTCATTGGAAACTAGCATGCCTGGTGGGTCAGCAGCCAGAGGAAGGTCAGTGCTCAGCCAAGCTTTGCAGTTCTACGGAAACAGCTGCCCTGGGACCATATGAGGCTTATGCCTTGAGAAATCAAGAGTCTCTATTACACCAACTGCATAAAAGATGGGCCGCCTGCCCTTGGCTTGTGATCCGTTATTAGCCCTGTCAGTTTCCATTCGACCTGTTGGCATTTCAAACAACATGCGGCAGTGGCTTGTTTTATTTCGGCTAATAGGTTGTGGAAGTTAGAAACATTTTTCTAGCACAAATTAATCAGCCAAGCTGAGCTAAAAAA

Function

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU324150 lncRNA downstream 45786 2571278 ~ 2571523 (-) True G286016
TU324214 lncRNA downstream 171709 2445183 ~ 2445600 (-) True G286080
TU324210 lncRNA downstream 214389 2402601 ~ 2402920 (-) True G286076
TU324208 lncRNA downstream 232550 2384549 ~ 2384759 (-) True G286074
TU324204 lncRNA downstream 236141 2380926 ~ 2381168 (-) True G286070
TU324239 lncRNA upstream 27001 2648535 ~ 2648989 (-) True G286099
TU324245 lncRNA upstream 53178 2674712 ~ 2676873 (-) True G286105
TU324267 lncRNA upstream 253829 2875363 ~ 2875660 (-) True G286127
TU324268 lncRNA upstream 254147 2875681 ~ 2876025 (-) True G286128
TU324274 lncRNA upstream 279441 2900975 ~ 2901187 (-) True G286134
CI01000072_02572648_02594029.mRNA mRNA downstream 23280 2572648 ~ 2594029 (-) True CI01000072_02572648_02594029
CI01000072_02561995_02567695.mRNA mRNA downstream 48952 2561440 ~ 2568357 (-) True CI01000072_02561995_02567695
CI01000072_02540610_02559153.mRNA mRNA downstream 58156 2540605 ~ 2559153 (-) True CI01000072_02540610_02559153
CI01000072_02536049_02537741.mRNA mRNA downstream 79568 2535202 ~ 2537741 (-) True CI01000072_02536049_02537741
CI01000072_02528257_02532888.mRNA mRNA downstream 84421 2528076 ~ 2532888 (-) True CI01000072_02528257_02532888
CI01000072_02628853_02630214.mRNA mRNA upstream 6549 2628083 ~ 2630214 (-) True CI01000072_02628853_02630214
CI01000072_02633510_02645090.mRNA mRNA upstream 11303 2632837 ~ 2645392 (-) True CI01000072_02633510_02645090
CI01000072_02653471_02758823.mRNA mRNA upstream 31937 2653471 ~ 2758823 (-) True CI01000072_02653471_02758823
CI01000072_02922504_03031111.mRNA mRNA upstream 300970 2922504 ~ 3031111 (-) True CI01000072_02922504_03031111
CI01000072_03049529_03055114.mRNA mRNA upstream 426468 3048002 ~ 3055582 (-) True CI01000072_03049529_03055114
TU323875 other downstream 446651 2168048 ~ 2170658 (-) True G285752
TU323892 other downstream 609000 2005551 ~ 2008309 (-) True G285766
TU323812 other downstream 989414 1602289 ~ 1602443 (-) True G285697
TU323815 other downstream 989414 1594111 ~ 1627895 (-) True CI01000072_01596829_01610605
TU323625 other downstream 1262377 1335507 ~ 1354932 (-) True G285534
TU324139 other upstream 372235 2993769 ~ 2999495 (-) True G286005
TU324361 other upstream 1348736 3970270 ~ 3976002 (-) False G286205
TU324366 other upstream 1348736 3970270 ~ 3976067 (-) False G286205
TU324367 other upstream 1348736 3970270 ~ 3976002 (-) False G286205
TU324368 other upstream 1348736 3970270 ~ 3976002 (-) False G286205

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00017031 True 2588 mRNA 0.43 8 NC_007126.7 24588963 ~ 24597953 (+)