RNA id: CI01000072_02528257_02532888.mRNA


Basic Information

Item Value
RNA id CI01000072_02528257_02532888.mRNA
length 1084
RNA type mRNA
GC content 0.47
exon number 6
gene id CI01000072_02528257_02532888
representative True

Chromosome Information

Item Value
chromosome id CI01000072
NCBI id null
chromosome length 5473029
location 2528076 ~ 2532888 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CTGTTGCTCGCACAGGGGCCTGCCGGTGAACTCACACTCCTCCTTTACTCCCTATCTCTCACAAAACACGCTCGCCGCGCGCTGTCCACCATGGGTGACCGGGAGGATTTGGTGTACCAAGCCAAGCTCGCCGAGCAGGCGGAGAGATATGATGAAATGGTCGACTCCATGAAGAAAGTGGCTGGGATGGATGTTGAGCTAACAGTTGAAGAGAGAAACCTGCTCTCCGTGGCCTACAAGAACGTTATTGGGGCGAGAAGAGCATCCTGGAGGATAATCAGTAGTATTGAGCAGAAAGAGGAGAATAAGGGTGGAGAGGACAAATTGAAAATGATTCGGGAATATAGGCAAACGGTTGAAACTGAGTTGAAATCAATCTGCAATGACATCCTCGATGTATTGGACAAGCACCTAATCCCAGCTGCAAATTCAGGAGAGTCCAAGGTCTTCTACTACAAAATGTATGAAAGCCATGAGTTTTTCCTGAATGAGTCTAAGGTTGAATCGAAGGGCGATTACCACAGGTATCTCGCTGAGTTTGCTACAGGAAACGACAGGAAGGAGGCTGCAGAAAACAGTTTGGTTGCTTACAAAGCTGCTAGTGATATTGCAATGACAGACCTTCAGCCTACACACCCTATTCGTTTGGGTCTGGCTCTTAACTTCTCCGTATTCTACTATGAAATCCTCAACTCTCCCGACCGTGCATGCAGGTTGGCAAAGGCGGCATTTGACGATGCTATTGCTGAACTGGACACATTGAGTGAAGAAAGTTACAAGGACTCGACACTCATCATGCAGTTGTTACGTGATAACCTGACACTATGGACTTCAGATATGCAGGGAGATGGTGAGGAACAGAATAAAGAGGCGCTGCAAGATGTGGAGGATGAAAACCAATGAGACAACACAGCCAATATGAGACTCCACCCCACTCCCCCTCCCCTTCCCCAGACCCCACTCACAAAGGGAGCCACCAAGCCCAACCTTATGAGTGGCACTCAACAGCTTGATGCCTCCAGTTTTCTCTCCCTTTGTTTGATTTTTAATATTATTGTTTTATTAGCCCTTAAATTGAAATAAA

Function

GO:

id name namespace
GO:0004497 monooxygenase activity molecular_function

KEGG:

id description
K06630 YWHAE; 14-3-3 protein epsilon

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU324214 lncRNA downstream 82476 2445183 ~ 2445600 (-) True G286080
TU324210 lncRNA downstream 125156 2402601 ~ 2402920 (-) True G286076
TU324208 lncRNA downstream 143317 2384549 ~ 2384759 (-) True G286074
TU324204 lncRNA downstream 146908 2380926 ~ 2381168 (-) True G286070
TU324202 lncRNA downstream 147743 2379770 ~ 2380333 (-) True G286068
TU324150 lncRNA upstream 38390 2571278 ~ 2571523 (-) True G286016
TU324239 lncRNA upstream 115647 2648535 ~ 2648989 (-) True G286099
TU324245 lncRNA upstream 141824 2674712 ~ 2676873 (-) True G286105
TU324267 lncRNA upstream 342475 2875363 ~ 2875660 (-) True G286127
TU324268 lncRNA upstream 342793 2875681 ~ 2876025 (-) True G286128
CI01000072_02508225_02525505.mRNA mRNA downstream 2315 2507653 ~ 2525761 (-) True CI01000072_02508225_02525505
CI01000072_02497534_02504872.mRNA mRNA downstream 23037 2497109 ~ 2505039 (-) True CI01000072_02497534_02504872
CI01000072_02483888_02489835.mRNA mRNA downstream 38221 2483826 ~ 2489855 (-) True CI01000072_02483888_02489835
CI01000072_02400147_02401427.mRNA mRNA downstream 126649 2399769 ~ 2401427 (-) True CI01000072_02400147_02401427
CI01000072_02306739_02309704.mRNA mRNA downstream 218372 2306646 ~ 2309704 (-) True CI01000072_02306739_02309704
CI01000072_02536049_02537741.mRNA mRNA upstream 2314 2535202 ~ 2537741 (-) True CI01000072_02536049_02537741
CI01000072_02540610_02559153.mRNA mRNA upstream 7717 2540605 ~ 2559153 (-) True CI01000072_02540610_02559153
CI01000072_02561995_02567695.mRNA mRNA upstream 28552 2561440 ~ 2568357 (-) True CI01000072_02561995_02567695
CI01000072_02572648_02594029.mRNA mRNA upstream 39760 2572648 ~ 2594029 (-) True CI01000072_02572648_02594029
CI01000072_02617680_02621357.mRNA mRNA upstream 84421 2617309 ~ 2621534 (-) True CI01000072_02617680_02621357
TU323875 other downstream 357418 2168048 ~ 2170658 (-) True G285752
TU323892 other downstream 519767 2005551 ~ 2008309 (-) True G285766
TU323812 other downstream 900181 1602289 ~ 1602443 (-) True G285697
TU323815 other downstream 900181 1594111 ~ 1627895 (-) True CI01000072_01596829_01610605
TU323625 other downstream 1173144 1335507 ~ 1354932 (-) True G285534
TU324139 other upstream 460881 2993769 ~ 2999495 (-) True G286005
TU324361 other upstream 1437382 3970270 ~ 3976002 (-) False G286205
TU324366 other upstream 1437382 3970270 ~ 3976067 (-) False G286205
TU324367 other upstream 1437382 3970270 ~ 3976002 (-) False G286205
TU324368 other upstream 1437382 3970270 ~ 3976002 (-) False G286205

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00017042 False 1777 mRNA 0.42 6 NC_007126.7 24746444 ~ 24754895 (+)