RNA id: CI01000072_02306739_02309704.mRNA


Basic Information

Item Value
RNA id CI01000072_02306739_02309704.mRNA
length 1245
RNA type mRNA
GC content 0.44
exon number 7
gene id CI01000072_02306739_02309704
representative True

Chromosome Information

Item Value
chromosome id CI01000072
NCBI id null
chromosome length 5473029
location 2306646 ~ 2309704 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATGACCGGTCTCAAAACCTTCATCAGACAGTTCACAATTATTCAAGCAAATGTTCATTGCAGGCAACTGTTCAAAACTCTTCTGATGGGTCAAGGCCTCTCAGCTCTGATCTGTGGGACTGCTGTAACATCTCAGTATCTGGCATCCGTTTATTACCTTGACACACCAATGCTGCAGAGCTTTATTAATTACACCCTCCTAGGCATTACTTACACCATGGCACTGATCTTCAGAAGAGGTGATGGCAATATTTTGCAGATATTAAAGACAAAATGGTGGAAGTATCTATTGTTGGGACTGGCAGATGTGGAAGCCAATTACGCAGTGGTGAAAGCATACCAGTACACCACATTAACTAGCATACAGCTGCTGGACTGCTTTATTATCCCGGTTTTGATGATCTTGTCCTGGTTCTTCTTGAAGACTCGCTATAGAATCATTCACTATGTAGCTGTGTGTATATGTCTGGCTGGAGTGGGAGCCATGGTGGGAGCAGACATCCTCGCTGGCCAGGAACAGGGATCAACCAGTGACATTCTCCTTGGTGATGGTCTGGTTCTAGTCAGTGCCACTCTGTATGCCATCTCTAATGTGTGCCAGGAATACACGGTGAAGAATCTGAGCAGGGTGGAATTTCTGGGAATGGTCGGCCTCTTTGGGTCAATCATCAGTGGAATACAACTAGGGATTCTCGAACATAACCAAGTGTCTAAAATTCAGTGGACATGGGAAATTGCTCTTCTCTTGGCTGTATATGTGCTCTGTATGTACGGCTTCTATAGCTTCATGCCTGTAGTGGTAAAGATGACCAGCGCCACAGCGGTTAATCTTTCCTTACTCACTGGAGACCTCTTCAGCCTGTTTTGTGGGCTCTTTTTGTTCCAATACACTTTCTCAGGACTGTATATCGTGTCACTGGTGGTGATCCTCATTGGTTTCATAATGTTTAACACTGTCCCTACACTGACCCGAGCTCCTAACCCAGCGTCTGACGAGGAAGGTTGTGACAATCATGCCGTGGAGCTTGATAACAACAGCATTCAAGGCTGTGTGGATGAGATGAGCTGTGCACAAGTAGAGCAAAGTCAAATCAAGAGCCAGCTGAACGAAAGACAGTCAGCATGTGTTGTCATAAACAGTGTTAAGATGTAGTTTTGATAATTCCTTGGTAAAAATACATGAGAATTTATTGTCATTATATTTTAATAGTTGGTAATGATGATAGATCATGTGACAATGAATAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU323866 lncRNA downstream 120322 2186079 ~ 2186324 (-) True G285745
TU324030 lncRNA downstream 179255 2127077 ~ 2127391 (-) True G285903
TU324015 lncRNA downstream 236510 2069814 ~ 2070136 (-) True G285888
TU324014 lncRNA downstream 237288 2069115 ~ 2069358 (-) True G285887
TU323878 lncRNA downstream 247648 2053423 ~ 2058998 (-) True G285753
TU324184 lncRNA upstream 49540 2359244 ~ 2359526 (-) True G286050
TU324185 lncRNA upstream 49983 2359687 ~ 2360866 (-) True G286051
TU324084 lncRNA upstream 55141 2364845 ~ 2365233 (-) True G285953
TU324200 lncRNA upstream 69246 2378950 ~ 2379178 (-) True G286066
TU324202 lncRNA upstream 70066 2379770 ~ 2380333 (-) True G286068
CI01000072_02074797_02106818.mRNA mRNA downstream 199773 2073987 ~ 2106873 (-) True CI01000072_02074797_02106818
CI01000072_02041267_02050950.mRNA mRNA downstream 253462 2040738 ~ 2053184 (-) True CI01000072_02041267_02050950
CI01000072_01987945_01988280.mRNA mRNA downstream 317873 1987274 ~ 1988773 (-) True CI01000072_01987945_01988280
CI01000072_01973002_01985111.mRNA mRNA downstream 321402 1972896 ~ 1985244 (-) True CI01000072_01973002_01985111
CI01000072_01946903_01949124.mRNA mRNA downstream 357522 1945288 ~ 1949124 (-) True CI01000072_01946903_01949124
CI01000072_02400147_02401427.mRNA mRNA upstream 90065 2399769 ~ 2401427 (-) True CI01000072_02400147_02401427
CI01000072_02483888_02489835.mRNA mRNA upstream 174122 2483826 ~ 2489855 (-) True CI01000072_02483888_02489835
CI01000072_02497534_02504872.mRNA mRNA upstream 187405 2497109 ~ 2505039 (-) True CI01000072_02497534_02504872
CI01000072_02508225_02525505.mRNA mRNA upstream 197949 2507653 ~ 2525761 (-) True CI01000072_02508225_02525505
CI01000072_02528257_02532888.mRNA mRNA upstream 218372 2528076 ~ 2532888 (-) True CI01000072_02528257_02532888
TU323875 other downstream 135988 2168048 ~ 2170658 (-) True G285752
TU323892 other downstream 298337 2005551 ~ 2008309 (-) True G285766
TU323812 other downstream 678751 1602289 ~ 1602443 (-) True G285697
TU323815 other downstream 678751 1594111 ~ 1627895 (-) True CI01000072_01596829_01610605
TU323625 other downstream 951714 1335507 ~ 1354932 (-) True G285534
TU324139 other upstream 684065 2993769 ~ 2999495 (-) True G286005
TU324361 other upstream 1660566 3970270 ~ 3976002 (-) False G286205
TU324366 other upstream 1660566 3970270 ~ 3976067 (-) False G286205
TU324367 other upstream 1660566 3970270 ~ 3976002 (-) False G286205
TU324368 other upstream 1660566 3970270 ~ 3976002 (-) False G286205

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00017058 False 1173 mRNA 0.47 8 NC_007126.7 25156382 ~ 25169613 (+)