RNA id: CI01000072_01973002_01985111.mRNA


Basic Information

Item Value
RNA id CI01000072_01973002_01985111.mRNA
length 2591
RNA type mRNA
GC content 0.52
exon number 15
gene id CI01000072_01973002_01985111
representative True

Chromosome Information

Item Value
chromosome id CI01000072
NCBI id null
chromosome length 5473029
location 1972896 ~ 1985244 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATGTTCGGATATTTCAGCTGAAGAACAGTAGGTGGCACTCGGGCACTATATCACTCAGTGGAGATTGTGCAGAAGGAAAGCCAGGCGCGTGGATATGACGTCAATAAAGTTTACATGTGCGGCATGACGGAAAATGGCTGCAGGAGATGAACAGCAGCAGGCTCACAGAGCTGGAGCTTATAAACAGAAAAACAAACAACACAAGCATGGAAAACATCGAACTAAAGGCGAGATCGGGCGTGAGAACAAGGGTAGAGTTGCTGTCATGGCTCTCACCAAAAAACAGAGAAGAGTGATAAGGAAAATGGACCGCAGAAACAAAGCCAACCAGCTGCGTCGCAACAAAAAAGACTTGGTGCTGACAGAGAAAAGGAAGCTGGGCAGCAGGGATGGACCCCCTCATCTGGTGGCAGTCATAGGTCTTCATGCAGGAGTGGATGCTAGCGCTGTCAGCAAGATATTGAGAGGTGAAGGAGTTGGTGGCGTGGTGCATGAGGATCAAGGAGTCCCTGGGGCTAAGGACAGTTTTGGTCTTGTTCTACCCCGCTTTAAACAGAGATTCACTTTCTACACTCCAGACACAGTTGATATGCATTCACTCCTGGATGTGGCGAAGATTGCAGACAGTTTGGTGTTTGTGTTAGAGTCGACTGAAGGTTGGGACAGCTATGGAGAGTACTGCCTGTCCTGCCTCTTTGCCCAGGGGTTGCCAAGTCATGCACTGGTGTGTCAGGGAGTGGCCAATCTAGCGGTGAAGAAACGCGCTGAGTCTCGGAAAGCACTCTCTCGTTTGGTAGAGTCTCATTTCCCAGATGGGCGTCTCTTCCCTGTGGACAACGAACAGGATGCCACGCTATTGCTGAGGCACCTGTCGGCACAGAAACAGAGGCGCCTGGGCTTCCGCTCTCGCCGCTCACACCTGCTGGCTCAGAAAGCCACATATATACCGAACGCCAGCCAGAATGGGACAGGGGGCCCAGCCACAGGGTTAGGAACCCTCTGTGTGTCAGGATATATTCGAGGCTGTCCTCTGCAAGTCAACAGGCTGGTGCATATCACAGGTCATGGAGACTTTCAGCTCAGCCAGATCGATGCTCCTGCAGACCCTCTACCCATCGTGACAGCAGCCCCTCGCCAGGCGAAGCCAGGACGAGACGTAGAGATGACGGATGGTGGTGATGGAGATATGAGTGGGGATGTTCGGGTGTTGATGAAAGCAGACCCTGAGAAGAGAGAGAGCCTGCAGGCGGAGGCAGAGGTGGACCCCATGGATGGGGAGCAGACGTGGCCCACAGAAGCAGAGCTGGAGGAGGCAGAAGAGGCCAGTAAGAACAGGAGAGTGATGAAGGATGCTGGATCTGAATGCGCATCTGAAGGAGATGATGACGACGGGGAAGAAGAGGAGGAGGAGATCAGTTCCACCGGACGCACCGGAGTCGATCAGAAGTATGATGAAGACATTGACGAGGCTGAGGAGGGAGAGGGGCTGAGGAGATATCGAGAGGCACGTGCCAATGAGATGTTCCCCGATGAAGTCGACACTCCCCTAGACGTCCCAGCCAAGACACGGTTCCAGAGGTTCAGAGGTCTGAAGAGTTTTCGTTCCTCCCCATGGGACCCCTTGGAGAACTTGCCTCCCAACTACTCGCGCATCTACCAATTCCAGAACTTTGAGCGCATGCGTCGCCGAATATTAGCAGATGCTGCTAGCGAGGATGAAGGAGCGATGGTAGGCTGGTATGTGACTCTTCATATTGTGGACGTTCCTCCCTCAGTAATGGAGAGCTTCCTGACCGGCAAACCATTAGTGCTGGTGTCTCTGCTACCACATGAACAGAAGATGTCAGTGATGCATATGTTGGTGCGGCAGCACCCGAGCAACACAGAACCCATCAAGTCGAAAGAGGAGCTGGTGTTTCAGTGTGGTTTCAGACGCTTCAGAGCTTCAGCCATCTTCTCACAGCACACTTCTGCTGATAAACACAAGTTGGAGCGGTTCCTGCGTCCTGATGCTCCTACAGTGATGTCTGTCTATGCCCCCATTACCTTCCCCACAGCTGGTGTCCTGGTCTTCAAACAGCGAGACAATGGTATGCAGGACCTGGTGGCCACAGGTTGTCTTTTGAGCTGCGATCCTCGGCGTGTGGTGTTGAAGAGAATCGTGCTGAGTGGACACCCTTTCAAAATCAATCGGCGCTCTGCTGTGGTCCGTTACATGTTCTTCAACAGAGATGATATTCTGTGGTTTAAGCCAGTAGAACTACGTACAAAATGGGGACGAAGAGGACACATCAAGGAAGCTTTAGGTACTCACGGCCACATGAAGTGTGTATTTGACAATCAGCTACGCTCTCAGGACACAGTGCTGATGAATCTGTATAAGAGGGTGTATCCTCGCTGGACCTACGACCCCTATGTCCCCGCCCCTCTGCCTTGGGTCAAGAGAGAGCAGCCACCGGCATATTCTGACATTGACATGGACTAGAGGCAGGAAGTTATGAACTGAAAGCAATGGAAGCATAACATGACACTAACTGCTTGTGTCACAGCTTCTCAGATATTGATTCTCTGTACTTTAATTGACAATTAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU324004 lncRNA downstream 5606 1967012 ~ 1967290 (-) True G285877
TU323999 lncRNA downstream 12087 1960520 ~ 1960809 (-) True G285872
TU323998 lncRNA downstream 13837 1958738 ~ 1959059 (-) True G285871
TU323864 lncRNA downstream 33578 1937606 ~ 1939318 (-) True G285743
TU323891 lncRNA downstream 37123 1934068 ~ 1935773 (-) True G285765
TU323881 lncRNA upstream 14219 1999463 ~ 2068360 (-) True G285755
TU323888 lncRNA upstream 18596 2003840 ~ 2022763 (-) True G285762
TU323877 lncRNA upstream 68179 2053423 ~ 2055109 (-) False G285753
TU323878 lncRNA upstream 68179 2053423 ~ 2058998 (-) True G285753
TU324014 lncRNA upstream 83871 2069115 ~ 2069358 (-) True G285887
CI01000072_01946903_01949124.mRNA mRNA downstream 23772 1945288 ~ 1949124 (-) True CI01000072_01946903_01949124
CI01000072_01901888_01919435.mRNA mRNA downstream 53423 1900924 ~ 1919473 (-) False CI01000072_01901888_01919435
CI01000072_01854562_01862622.mRNA mRNA downstream 110208 1854334 ~ 1862688 (-) True CI01000072_01854562_01862622
CI01000072_01826415_01834432.mRNA mRNA downstream 138449 1826325 ~ 1834447 (-) True CI01000072_01826415_01834432
CI01000072_01816759_01818078.mRNA mRNA downstream 154551 1816724 ~ 1818345 (-) True CI01000072_01816759_01818078
CI01000072_01987945_01988280.mRNA mRNA upstream 2030 1987274 ~ 1988773 (-) True CI01000072_01987945_01988280
CI01000072_02041267_02050950.mRNA mRNA upstream 55494 2040738 ~ 2053184 (-) True CI01000072_02041267_02050950
CI01000072_02074797_02106818.mRNA mRNA upstream 88743 2073987 ~ 2106873 (-) True CI01000072_02074797_02106818
CI01000072_02306739_02309704.mRNA mRNA upstream 321402 2306646 ~ 2309704 (-) True CI01000072_02306739_02309704
CI01000072_02400147_02401427.mRNA mRNA upstream 414525 2399769 ~ 2401427 (-) True CI01000072_02400147_02401427
TU323812 other downstream 345001 1602289 ~ 1602443 (-) True G285697
TU323815 other downstream 345001 1594111 ~ 1627895 (-) True CI01000072_01596829_01610605
TU323625 other downstream 617964 1335507 ~ 1354932 (-) True G285534
TU322054 other downstream 1688617 283623 ~ 283764 (-) True G284127
TU323892 other upstream 20307 2005551 ~ 2008309 (-) True G285766
TU323875 other upstream 182804 2168048 ~ 2170658 (-) True G285752
TU324139 other upstream 1008525 2993769 ~ 2999495 (-) True G286005
TU324361 other upstream 1985026 3970270 ~ 3976002 (-) False G286205
TU324366 other upstream 1985026 3970270 ~ 3976067 (-) False G286205

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00017069 False 2653 mRNA 0.51 15 NC_007126.7 25635327 ~ 25656327 (+)