RNA id: CI01000072_02074797_02106818.mRNA


Basic Information

Item Value
RNA id CI01000072_02074797_02106818.mRNA
length 5632
RNA type mRNA
GC content 0.47
exon number 30
gene id CI01000072_02074797_02106818
representative True

Chromosome Information

Item Value
chromosome id CI01000072
NCBI id null
chromosome length 5473029
location 2073987 ~ 2106873 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATATTCATCGGTTGTTGCATTGCTAATAGTTATCTCTTCAGCTGATAAACCAACAATGGAGACAAAACAGTGTGAAGAGGTCACGGAGATGGTGTGTTTAGAGTCAGATCTGCAGGATGGACAAATGAAGGAGGTTGAGGTGGACCAGCATAAAATCCTGTTGGTACGCAATAAGGGAGAATTTGCTGCTGTGGGTGGTCTGTGCACTCATTATGGCGCCCCACTTATCAAAGGTGCATTGGTTGGAGATCGAGTTCGGTGCCCGTTTCATGGAGCATGTTTCAATACTAAAACTGGAGATATTGAAGAATTTCCTGGGCTGGATTCTCTGCCTACGTTCAAAGTCAAAGTTGAGGGTGGTAAAGTTTATGTGACTGCTGATAAAAAGAAACTGAAGAAGCGTGTTAAGAAAATGTGCGGTAGAGTGCCTGGAGTCAGTCACACTGTTGTTCTGATTGGAGGAGGTCCAGCTTCATTGCAATGTGCAGAAACCCTTCGTCAGAATGATTATGGAGGGAGAATTATAATGGTTACGAAAGATGAGCAGCTGCCTCTGGATAAGACCAAGCTTAGCAAGGCAATGAATATTGAAATTGAAAAGGTGTTGCTACGACAGATTGATTTCCTTCAACAACATGGAATTGAAGTGTGGACTAAAACAGAGGTAAAGTCTGTTGACACAGAGGCTAAAACATTGACTTTCAAGGATGGCACTGTCCAACACTATGACCAGCTCTTGATTTCTACAGGTGGCAGAGCCAGACCTCTGCAGTGTCCTGGTGCTGAACTGGAAAACGTGAAATTGCTGCAGAGCTTTAAGGATGCCACAGAAATTCATCACAAGAGTGTAGGCAACAAGGCCGTCATCGTTGGAACTTCATTCATAGGAATGGAGGTAGCAGCTTATCTGTCTGACAAGGCAGCCAGCGTCACTGTTATCGGCAGCATAATTCATCTTCTGTTAAAGATGCTGGAGGAGAAAAATGTAAAGTTCTACACATGTAATGGTGTGGCTGAAATTCGAGGTGAAAATGGAAAGGTACATTACGTCTATATTCCTTTCAAAGGTGTCATTCCCAACACTGATTTCCTTAAGAGAACATCAGTGGAAATTGATTCACGCAATGCTGTTGTTGTTGACAAGTTCATGAAAACCAACATTCCTGATGTCTTTGCTGCTGGAGATGTGGTGTCTTTTCCACTTCCTTTGGTCGGACATAAGAGAGTCAATATTGGACATTGGCAATTGGCACAAGCTCACGGAAGAATTGCTGGCTTAAGCATGCTGAATCAACAGGTTGCGATTAATACTGTGCCATATTTCTGGACCATGCTGTTGGGGAAAAGTATCCGATATACAGGCTATGGGGAAGGATACACTGACATTGTTTTAAAAGGAAGTACTGAGGAAAGAAAATTCTTGGCATTTTATATCAAAGATGAAGAAGTTGTTGCAGCTGCCAGTTTGAACTTTGACCCTGCTGTCGCGAGGTTGGCAGAAATGTTATTGATGGGGAAGAGGATCACTAAGGCTCAGGCACATTTCACTTTCTTTGCTCCTGTGCTTGTTTCTAGCAGCTGTGAGTTTGTCCGGATATGTCTGCTTCGAGGAGCCATGTTCAGCAAGAAAAAAAAGCAACGTGTCCAGATCTCGGCACCCTCCAACTTTGAGCATCGTGTCCACACTGATTTTGATGAGCAGGAGCAGAAGTTTGTGGGGCTTCCACGCCAATGGCAGAGCCTCATTGAGGACACGGCCAAGAGGCCCAAACCCTTCATCGACGCCACAGTCATCACTACTGTAGAGCCACGCAAGACAATCGTGCGGGGTCGTAAGATCGGTGACGATGGCTCTCTCACGTGGCTCCTGGATGAGTTTGAGACCATGTCTGTGATCCGCTCAAACTCCTTGCGGAGAGGCAGCCCACCACCACAGCCACGCAGAGACTCCGGATCATCAGGAGGGGGCCACGAGAACGGAGAACACCCCCAATACAGACATCCTGATCGCTATGGAGACAGCAAAGAGAGGGAGAAACCACGTCAGGAGCACCCAGGTGCTGACCCCAGACAGTCTCAGCGGCCAGCCCGCTCATCCAGAGAGGACAGCCGACCTCACCAGCAACCTCGCGGTCAGGAGCCCAGCAGGCACAAAGAGCCCAACTGGTCAGGAGGGCCAGCCGCACCGCCCCAGCACAGAGAGCGAGACAGAGACCCACGTGATTATCATGATCAGGTAGTAAGGAGAGAGGGAAACAACGATAAGAGGCCCAAATCCAGCTACACTGGTAGGGACAGCAGCCCACAATCGCCTCGAGAGAAGAGACCACTGTCTGGGCCAAATATCCGCACCCCTAACCTGCCTGTTACAGAGGGAGTAATAAAGACCGCACAGCAGACTGGCCGACCTTTCAACACATACCCACGTGCCGAAAGTGACTCTGGAAGAAGCCCCAGCGGCCAGGATTTAAAACCAGCAAAATCTCATGAGCCTTCCCACCACAACGGCCCCTCTACTGGGGCAGTCCGGGGTGGCAGCAGCAGCAGTAAAACTTCTGCTCAGGGGCCGCACAGAGCAGAGCCCCAGCATCACGCTTCCCAACCAGCCTTAGGCCCTGAGCCTCCTCACAACCAGCAGATGCCCCCAGCACCAAAACCATCAGGCCCAACTGCACCACCCCAGCAGACTCGCTCACCTCAGAGGGAGCCACAGCGGGTCTCCCACGAACAGTTCCGTGCTGCTTTACAGATGGTGGTCGACCCCGGGGACCCACGCACTTATCTGGACCACTACATCAAGATCGGGGAAGGTTCCACTGGCATTGTTTGTATCGCTACAGTGAAGACCACAGGCAAGCTGGTGGCTGTGAAGAAGATGGATCTGCGAAAACAGCAGCGACGAGAATTGCTGTTTAATGAGGTGGTGATCATGCGGGACTATCACCATGAGAACGTGGTGGAGATGTACAACAGTTATTTAGTGGGCGACGAACTCTGGGTTGTCATGGAGTTCCTTGAGGGTGGAGCTTTGACTGACATCGTCACACATACCAGGCATTTATGTTGTTTGACTGTTTTCAGGATGAATGAGGAGCAGATCGCCACTGTTTGTCTGTCAGTTCTGAAAGCACTCTCGGTCCTTCACTCCCAGGGAGTCATTCACAGAGACATTAAGAGTGATTCTATTCTTCTCACCCATGATGGCAGGGTGAAGCTGTCAGACTTTGGCTTTTGTGCCCAGGTCTCTAAAGAGGTGCAGCGCAGGAAGTCTCTCGTAGGAACGCCCTATTGGATGGCCCCCGAGCTCATCTCAAGACTCCCATATGGACCAGAGGCAAGTCCCATTCCCCTTTACTGTTCATATTATGTTGCATTATTGCTGACAGCACCGCAGCTTATACAAACAAAACTGTTTCCACAGGTGGATATTTGGTCACTTGGCATTATGGTGATTGAAATGGTGGATGGAGAGCCGCCGTACTTCAATGAGCCTCCTCTCAAGGCTATGAAGATGATCCGAGACAATTTGCCACCGAAGCTTAAAAACCTTCACAAGAATACGGCGTCCTATGTGGGCGGTCCACTCTCGTTGATGCTGGGCGGGGCTATCGTGATCGCGCATCACGGCGACCAATCAGAGCTCGAGCTGCGTATGATAACTCAGCTGTGCGCTCACATAATCCTTCTGCAAAATGCACTTACTGGTAAAGGATTCACATTTAAGTTCTACAGTTTAATAATGAATTTAGTAAAGGAGGTGGCAGCAAGCCGCCCACATTGTGGTATGTTTTGTGCCAAGCTTATCTGTGAAAATGTCAAGCTGCCAAGGAGGGACAATCCCACATGTTACACAGATGACTACACCATTGCAGAAATCATAGCAAGCATTCCGTTTTTATGGTTCTTGAACATGTTTGCATACATCTTGCCCCAGTTTGTGGCAAAGCTGCCAGTCATTTTTAGACCACTACTGAGTGACGCCCTGACATTTAACGCCGCCTTTGCCATGGGAAGTTGCACTCTGGGTCGTGCATGTTGTGTTGTTCTCGGGTCACAGGCTGGGACAGGTGTTTTGATGTCTGCACAGCGATTGTCTCTCTGGACATGTCTGCGTACTGCCCTGAGCTGCGGCGTTCTCATGCTGGCTGCTCTGCCAGACTTAACCACAGGCAAGAATTGCTCCCACCCGATCATCCCTGAGCATGGAGGTTTCCGCTGTGAACCCTCTCCCTGTCGCGGCTTCCCCCAAAAGAGCATCATTCGCTTCTTCTGTGAGCCCGGCTACACTCTTCCCAAACGACAGCATTGGTCAAAGTGTCAGCATGGGGAATGGCATCCGAAAGTGCCCGTCTGTATGCTCCGAGCAGAGGGTCATGCTGAACAACAAGAAAAAATAGTTAACTCTATCCCAAGTGTGGCTACGACTGCTATTGGAGTGTCCATCTTCCTTCTCACAACAACAGCCTGTTTGGTCATCAAATCCCGTCTACTCTCCTGCCGAACGCAACGGCGTTCCTCAGACCAGTTGGACCTTGTGGTAGATGGTTTACCTGTATCTCTTCCCACATATGAGGAGGCAATCTATGGCAGTTGGGGCCAGCGACTCCCACCGTTCCGTGGACCCACTCAGCTCCTATTGGCCCAGGACACATCAGAACACAGTCCGCTGACTTCGCTCATACGGTCCGATTTGAATCGTGGCACAGACACAGCCAATCAGAGCACAGAATCTCTGCCGCCGCCTTATGAAGAGGTCCAATCACGATCCAGAGACACTGGGAATGACAGTGAAAGTGCACTTTCTGATGATAAAAACAACTAATTACTGGACTATAAATGAACTCACCTTTAGCCTTTTGATTGTTTATTTCCTTGCACAGGAGTCCTTGTGACTTTTCTTTCAACCTTTGATTGTGGATTCATACTTTTGTGGCTTAAAACACCAGTACAACACTGGTGCAAATGTTTCGCAACGACCTTATTGGTCAGATATATTTGGTTTTCTTTGGTGACCTGCTGCAATATTCATTTTTGTCAATGTTTTCACTGACCAAGCTGGAGATGTGGCTATCGTCTCCCCTCCGTGAGGGGAAACAAGGTGTTCAAGGGGACTTTTATGATTGATGAATGACTTTTATTTAATATTGTAGGTATTGCAGCTATATCTGTGAGGATGAGATGCTGTGTAGTTAAATTTTAGGGGTGATGACTTCAGATTAGTATGGAAAGAATGATTCCTTTGACTGATACCTGACCTTTCACCTCATTCAGTGTTTTTTTTTTTTTTTTTTTTTTTTTTCTCTCAGAGCATTTAGATTGCATGAATGTCATAGCCAGACTGAGATTGTGCCTGTTGACTGATGGATTGTAGTATATATGATTTTATTCTGATTCCTTCCACCTGAATAGATCTATCTGTTGTTAAATACTGCATTAATATATAGAACAGGGGAACTGACTTGAAGTATGCTTGCTGAATGGACATTGAATGTGTTTTTGTGTTTATATTCTTCATTTATCATTTTATGATATGTAACATTTACATCTTGTATATAGTTCTGCACAAATGGAGTATGTAAAATTAATAATTATACATTTTTAAAAATTTATGAATGGAATGTTTGCTATTAAA

Function

GO:

id name namespace
GO:0048598 embryonic morphogenesis biological_process

KEGG:

id description
K05734 PAK4; p21-activated kinase 4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU324015 lncRNA downstream 3851 2069814 ~ 2070136 (-) True G285888
TU324014 lncRNA downstream 4629 2069115 ~ 2069358 (-) True G285887
TU323880 lncRNA downstream 5627 1970371 ~ 2068360 (-) False G285755
TU323881 lncRNA downstream 5627 1999463 ~ 2068360 (-) True G285755
TU323878 lncRNA downstream 14989 2053423 ~ 2058998 (-) True G285753
TU324030 lncRNA upstream 20204 2127077 ~ 2127391 (-) True G285903
TU323866 lncRNA upstream 79206 2186079 ~ 2186324 (-) True G285745
TU323862 lncRNA upstream 117405 2224278 ~ 2310012 (-) True G285741
TU324184 lncRNA upstream 252371 2359244 ~ 2359526 (-) True G286050
TU324185 lncRNA upstream 252814 2359687 ~ 2360866 (-) True G286051
CI01000072_02041267_02050950.mRNA mRNA downstream 20803 2040738 ~ 2053184 (-) True CI01000072_02041267_02050950
CI01000072_01987945_01988280.mRNA mRNA downstream 85214 1987274 ~ 1988773 (-) True CI01000072_01987945_01988280
CI01000072_01973002_01985111.mRNA mRNA downstream 88743 1972896 ~ 1985244 (-) True CI01000072_01973002_01985111
CI01000072_01946903_01949124.mRNA mRNA downstream 124863 1945288 ~ 1949124 (-) True CI01000072_01946903_01949124
CI01000072_01901888_01919435.mRNA mRNA downstream 154514 1900924 ~ 1919473 (-) False CI01000072_01901888_01919435
CI01000072_02306739_02309704.mRNA mRNA upstream 199773 2306646 ~ 2309704 (-) True CI01000072_02306739_02309704
CI01000072_02400147_02401427.mRNA mRNA upstream 292896 2399769 ~ 2401427 (-) True CI01000072_02400147_02401427
CI01000072_02483888_02489835.mRNA mRNA upstream 376953 2483826 ~ 2489855 (-) True CI01000072_02483888_02489835
CI01000072_02497534_02504872.mRNA mRNA upstream 390236 2497109 ~ 2505039 (-) True CI01000072_02497534_02504872
CI01000072_02508225_02525505.mRNA mRNA upstream 400780 2507653 ~ 2525761 (-) True CI01000072_02508225_02525505
TU323892 other downstream 65678 2005551 ~ 2008309 (-) True G285766
TU323812 other downstream 446092 1602289 ~ 1602443 (-) True G285697
TU323815 other downstream 446092 1594111 ~ 1627895 (-) True CI01000072_01596829_01610605
TU323625 other downstream 719055 1335507 ~ 1354932 (-) True G285534
TU322054 other downstream 1789708 283623 ~ 283764 (-) True G284127
TU323875 other upstream 61175 2168048 ~ 2170658 (-) True G285752
TU324139 other upstream 886896 2993769 ~ 2999495 (-) True G286005
TU324361 other upstream 1863397 3970270 ~ 3976002 (-) False G286205
TU324366 other upstream 1863397 3970270 ~ 3976067 (-) False G286205
TU324367 other upstream 1863397 3970270 ~ 3976002 (-) False G286205

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00017062 True 5449 mRNA 0.44 10 NC_007126.7 25452092 ~ 25486010 (+)