RNA id: TU324014


Basic Information

Item Value
RNA id TU324014
length 244
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G285887
representative True

Chromosome Information

Item Value
chromosome id CI01000072
NCBI id null
chromosome length 5473029
location 2069115 ~ 2069358 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AAAACTTTCCTGGCTAACCAACAGAGAACGTTAGGACGAATGTTCTGGGAACGTTCCCAGAACGTTCTGGGAACCAAAAATTGTTAGGTGGGTATATATCATAGTTATATTTAACCCGTCCGTTATTGCTGTGGAAAGAATCGCGCTTTTTCATGGCCTGTTGAAAGTACCTTGTTGATGCTTAAATGTCCTTTTAATATTCGTTGGTTGAAGGGTGAGTAGAATAATGTCATCTCATTGTACC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU323880 lncRNA downstream 755 1970371 ~ 2068360 (-) False G285755
TU323881 lncRNA downstream 755 1999463 ~ 2068360 (-) True G285755
TU323878 lncRNA downstream 10117 2053423 ~ 2058998 (-) True G285753
TU323877 lncRNA downstream 14006 2053423 ~ 2055109 (-) False G285753
TU323888 lncRNA downstream 46352 2003840 ~ 2022763 (-) True G285762
TU324015 lncRNA upstream 456 2069814 ~ 2070136 (-) True G285888
TU324030 lncRNA upstream 57719 2127077 ~ 2127391 (-) True G285903
TU323866 lncRNA upstream 116721 2186079 ~ 2186324 (-) True G285745
TU323862 lncRNA upstream 154920 2224278 ~ 2310012 (-) True G285741
TU324184 lncRNA upstream 289886 2359244 ~ 2359526 (-) True G286050
CI01000072_02041267_02050950.mRNA mRNA downstream 15931 2040738 ~ 2053184 (-) True CI01000072_02041267_02050950
CI01000072_01987945_01988280.mRNA mRNA downstream 80342 1987274 ~ 1988773 (-) True CI01000072_01987945_01988280
CI01000072_01973002_01985111.mRNA mRNA downstream 83871 1972896 ~ 1985244 (-) True CI01000072_01973002_01985111
CI01000072_01946903_01949124.mRNA mRNA downstream 119991 1945288 ~ 1949124 (-) True CI01000072_01946903_01949124
CI01000072_01901888_01919435.mRNA mRNA downstream 149642 1900924 ~ 1919473 (-) False CI01000072_01901888_01919435
CI01000072_02074797_02106818.mRNA mRNA upstream 4629 2073987 ~ 2106873 (-) True CI01000072_02074797_02106818
CI01000072_02306739_02309704.mRNA mRNA upstream 237288 2306646 ~ 2309704 (-) True CI01000072_02306739_02309704
CI01000072_02400147_02401427.mRNA mRNA upstream 330411 2399769 ~ 2401427 (-) True CI01000072_02400147_02401427
CI01000072_02483888_02489835.mRNA mRNA upstream 414468 2483826 ~ 2489855 (-) True CI01000072_02483888_02489835
CI01000072_02497534_02504872.mRNA mRNA upstream 427751 2497109 ~ 2505039 (-) True CI01000072_02497534_02504872
TU323892 other downstream 60806 2005551 ~ 2008309 (-) True G285766
TU323812 other downstream 441220 1602289 ~ 1602443 (-) True G285697
TU323815 other downstream 441220 1594111 ~ 1627895 (-) True CI01000072_01596829_01610605
TU323625 other downstream 714183 1335507 ~ 1354932 (-) True G285534
TU322054 other downstream 1784836 283623 ~ 283764 (-) True G284127
TU323875 other upstream 98690 2168048 ~ 2170658 (-) True G285752
TU324139 other upstream 924411 2993769 ~ 2999495 (-) True G286005
TU324361 other upstream 1900912 3970270 ~ 3976002 (-) False G286205
TU324366 other upstream 1900912 3970270 ~ 3976067 (-) False G286205
TU324367 other upstream 1900912 3970270 ~ 3976002 (-) False G286205

Expression Profile