RNA id: TU323881


Basic Information

Item Value
RNA id TU323881
length 583
lncRNA type read_through
GC content 0.33
exon number 2
gene id G285755
representative True

Chromosome Information

Item Value
chromosome id CI01000072
NCBI id null
chromosome length 5473029
location 1970371 ~ 2068360 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ACGTTTTGAAAGCATTTAAAATGTTTTATTTCTTTATCAGTTAATACAAGCTATTCATACATTGGAAATAAATGATGCAAAAATACACAAAGTAACATACACAAAAAGTCTAAGTTATCAGAAGAACTGTTATCCATATGAGAAGGCATGTGTCTTATTGGACACCATTTGAATAAGGCCCCTTAAGTGGTGTCTGTACTAGCTACAGAAATCAGGGGAATATAACTTCACAGCCAACTGAAACAAAGCACCACAACTAATCATGTATGCCACCATTTAACAAAAAGTATCTGCTGCATAAAAGAGGATCAAGAAACATCAACAAACAAGATGATCGCTTTGCTGTAAATGCTTTCAAGCAATTTACTAGTACATTTGTCATTTTAGCATCTCATGTTATGATTCAAAAAGACATCGGACAAGGCTTTCAGTCAATACGACAGCAGTATCAACACTATAGCCTTTTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTACAAAACAACCAATTAGAATGCTAAGCTAACTAGCATAAGACAACAAACAGAGGCAAGGTCACATTCAGAGACAAATATCTCG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU324004 lncRNA downstream 32173 1967012 ~ 1967290 (-) True G285877
TU323999 lncRNA downstream 38654 1960520 ~ 1960809 (-) True G285872
TU323998 lncRNA downstream 40404 1958738 ~ 1959059 (-) True G285871
TU323864 lncRNA downstream 60145 1937606 ~ 1939318 (-) True G285743
TU323891 lncRNA downstream 63690 1934068 ~ 1935773 (-) True G285765
TU324014 lncRNA upstream 755 2069115 ~ 2069358 (-) True G285887
TU324015 lncRNA upstream 1454 2069814 ~ 2070136 (-) True G285888
TU324030 lncRNA upstream 58717 2127077 ~ 2127391 (-) True G285903
TU323866 lncRNA upstream 117719 2186079 ~ 2186324 (-) True G285745
TU323862 lncRNA upstream 155918 2224278 ~ 2310012 (-) True G285741
CI01000072_01987945_01988280.mRNA mRNA downstream 10690 1987274 ~ 1988773 (-) True CI01000072_01987945_01988280
CI01000072_01973002_01985111.mRNA mRNA downstream 14219 1972896 ~ 1985244 (-) True CI01000072_01973002_01985111
CI01000072_01946903_01949124.mRNA mRNA downstream 50339 1945288 ~ 1949124 (-) True CI01000072_01946903_01949124
CI01000072_01901888_01919435.mRNA mRNA downstream 79990 1900924 ~ 1919473 (-) False CI01000072_01901888_01919435
CI01000072_01854562_01862622.mRNA mRNA downstream 136775 1854334 ~ 1862688 (-) True CI01000072_01854562_01862622
CI01000072_02074797_02106818.mRNA mRNA upstream 5627 2073987 ~ 2106873 (-) True CI01000072_02074797_02106818
CI01000072_02306739_02309704.mRNA mRNA upstream 238286 2306646 ~ 2309704 (-) True CI01000072_02306739_02309704
CI01000072_02400147_02401427.mRNA mRNA upstream 331409 2399769 ~ 2401427 (-) True CI01000072_02400147_02401427
CI01000072_02483888_02489835.mRNA mRNA upstream 415466 2483826 ~ 2489855 (-) True CI01000072_02483888_02489835
CI01000072_02497534_02504872.mRNA mRNA upstream 428749 2497109 ~ 2505039 (-) True CI01000072_02497534_02504872
TU323812 other downstream 371568 1602289 ~ 1602443 (-) True G285697
TU323815 other downstream 371568 1594111 ~ 1627895 (-) True CI01000072_01596829_01610605
TU323625 other downstream 644531 1335507 ~ 1354932 (-) True G285534
TU322054 other downstream 1715184 283623 ~ 283764 (-) True G284127
TU323875 other upstream 99688 2168048 ~ 2170658 (-) True G285752
TU324139 other upstream 925409 2993769 ~ 2999495 (-) True G286005
TU324361 other upstream 1901910 3970270 ~ 3976002 (-) False G286205
TU324366 other upstream 1901910 3970270 ~ 3976067 (-) False G286205
TU324367 other upstream 1901910 3970270 ~ 3976002 (-) False G286205

Expression Profile