RNA id: CI01000072_02400147_02401427.mRNA


Basic Information

Item Value
RNA id CI01000072_02400147_02401427.mRNA
length 528
RNA type mRNA
GC content 0.41
exon number 2
gene id CI01000072_02400147_02401427
representative True

Chromosome Information

Item Value
chromosome id CI01000072
NCBI id null
chromosome length 5473029
location 2399769 ~ 2401427 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATGGCAAAGTTGAGTATTCGCCATGTGGTGTCACTGGTAGACAAGCATGAGCGTCAGAGCTGGAGTCTGCAGAGACTGTCTCTTCTAATCATACCTCCTCTCTCTGAGCTCAGGCTCCAGGCTGATGTTATATTTGGGGCTGTCCAGTAAAAGCGTGATCATGCATCCAATGAACTGTGTGATTCCAGGATCAGATAGCATGGAGCTTTGTGACTAAATGCACTAAACGCTCACAAATGCTTCGGTTTTACAGTCACTTTTGTGAGTCTGCTCTCAGGAACAGCTGTGGGAGTAAACGAAATCCCATTTCTTTTTCATGCAGTCTATTGCATAACCTATAATTCTGACATACCGTTTACAAACAAAAACCTGATTTACATACATTAATGTGTTTAGCTGAAACCCTTTAATTAAATCTCCCGTGTTCACACAGATAATTTAAACAAGAGGTTTGACACCATTTAGACATTACACATTTTTGAGATGGAGACAGAAAAGGCAGAAAACAAAAACAGTGGGGGGAATAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU324208 lncRNA downstream 15010 2384549 ~ 2384759 (-) True G286074
TU324204 lncRNA downstream 18601 2380926 ~ 2381168 (-) True G286070
TU324202 lncRNA downstream 19436 2379770 ~ 2380333 (-) True G286068
TU324200 lncRNA downstream 20591 2378950 ~ 2379178 (-) True G286066
TU324084 lncRNA downstream 34536 2364845 ~ 2365233 (-) True G285953
TU324210 lncRNA upstream 1174 2402601 ~ 2402920 (-) True G286076
TU324214 lncRNA upstream 43756 2445183 ~ 2445600 (-) True G286080
TU324150 lncRNA upstream 169851 2571278 ~ 2571523 (-) True G286016
TU324239 lncRNA upstream 247108 2648535 ~ 2648989 (-) True G286099
TU324245 lncRNA upstream 273285 2674712 ~ 2676873 (-) True G286105
CI01000072_02306739_02309704.mRNA mRNA downstream 90065 2306646 ~ 2309704 (-) True CI01000072_02306739_02309704
CI01000072_02074797_02106818.mRNA mRNA downstream 292896 2073987 ~ 2106873 (-) True CI01000072_02074797_02106818
CI01000072_02041267_02050950.mRNA mRNA downstream 346585 2040738 ~ 2053184 (-) True CI01000072_02041267_02050950
CI01000072_01987945_01988280.mRNA mRNA downstream 410996 1987274 ~ 1988773 (-) True CI01000072_01987945_01988280
CI01000072_01973002_01985111.mRNA mRNA downstream 414525 1972896 ~ 1985244 (-) True CI01000072_01973002_01985111
CI01000072_02483888_02489835.mRNA mRNA upstream 82399 2483826 ~ 2489855 (-) True CI01000072_02483888_02489835
CI01000072_02497534_02504872.mRNA mRNA upstream 95682 2497109 ~ 2505039 (-) True CI01000072_02497534_02504872
CI01000072_02508225_02525505.mRNA mRNA upstream 106226 2507653 ~ 2525761 (-) True CI01000072_02508225_02525505
CI01000072_02528257_02532888.mRNA mRNA upstream 126649 2528076 ~ 2532888 (-) True CI01000072_02528257_02532888
CI01000072_02536049_02537741.mRNA mRNA upstream 133775 2535202 ~ 2537741 (-) True CI01000072_02536049_02537741
TU323875 other downstream 229111 2168048 ~ 2170658 (-) True G285752
TU323892 other downstream 391460 2005551 ~ 2008309 (-) True G285766
TU323812 other downstream 771874 1602289 ~ 1602443 (-) True G285697
TU323815 other downstream 771874 1594111 ~ 1627895 (-) True CI01000072_01596829_01610605
TU323625 other downstream 1044837 1335507 ~ 1354932 (-) True G285534
TU324139 other upstream 592342 2993769 ~ 2999495 (-) True G286005
TU324361 other upstream 1568843 3970270 ~ 3976002 (-) False G286205
TU324366 other upstream 1568843 3970270 ~ 3976067 (-) False G286205
TU324367 other upstream 1568843 3970270 ~ 3976002 (-) False G286205
TU324368 other upstream 1568843 3970270 ~ 3976002 (-) False G286205

Expression Profile