RNA id: TU324084


Basic Information

Item Value
RNA id TU324084
length 389
lncRNA type inter_gene
GC content 0.49
exon number 1
gene id G285953
representative True

Chromosome Information

Item Value
chromosome id CI01000072
NCBI id null
chromosome length 5473029
location 2364845 ~ 2365233 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATATATTCTGTGGCTTGTGAGTTTCAACGTAGATTTGCAGGGCTGTTTGGTATAGCGTCCGTGAAACTTGCAGCCAACAGCAGCACTGGATTTGGCAGACTGCCAGCGCCACGCCTCTCCGCTGGGGGAAGGGAAAGTCCGTGCTGCTCGTATCTCCGTGAATTCACGGTTAATGCAACGACTAACGTGGTCAATCAGTCTTTAATACTTATTCACAACGACGTTTTGCAGTGATTACAATGTCCATCGACTCAAAAAGGATGTCCCAGCAGTCCACCACACTCACAATTCGCTGATGACTGTCAATCGCGCTCCGCTTCTGACACCACTTGTTGTGCTTTAGTCTTTCCTTTAACAGGTTCCGAGGAGGCGTGAAGAGAAGCACACAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU324185 lncRNA downstream 3979 2359687 ~ 2360866 (-) True G286051
TU324184 lncRNA downstream 5319 2359244 ~ 2359526 (-) True G286050
TU323862 lncRNA downstream 54833 2224278 ~ 2310012 (-) True G285741
TU323866 lncRNA downstream 178521 2186079 ~ 2186324 (-) True G285745
TU324030 lncRNA downstream 237454 2127077 ~ 2127391 (-) True G285903
TU324200 lncRNA upstream 13717 2378950 ~ 2379178 (-) True G286066
TU324202 lncRNA upstream 14537 2379770 ~ 2380333 (-) True G286068
TU324204 lncRNA upstream 15693 2380926 ~ 2381168 (-) True G286070
TU324208 lncRNA upstream 19316 2384549 ~ 2384759 (-) True G286074
TU324210 lncRNA upstream 37368 2402601 ~ 2402920 (-) True G286076
CI01000072_02306739_02309704.mRNA mRNA downstream 55141 2306646 ~ 2309704 (-) True CI01000072_02306739_02309704
CI01000072_02074797_02106818.mRNA mRNA downstream 257972 2073987 ~ 2106873 (-) True CI01000072_02074797_02106818
CI01000072_02041267_02050950.mRNA mRNA downstream 311661 2040738 ~ 2053184 (-) True CI01000072_02041267_02050950
CI01000072_01987945_01988280.mRNA mRNA downstream 376072 1987274 ~ 1988773 (-) True CI01000072_01987945_01988280
CI01000072_01973002_01985111.mRNA mRNA downstream 379601 1972896 ~ 1985244 (-) True CI01000072_01973002_01985111
CI01000072_02400147_02401427.mRNA mRNA upstream 34536 2399769 ~ 2401427 (-) True CI01000072_02400147_02401427
CI01000072_02483888_02489835.mRNA mRNA upstream 118593 2483826 ~ 2489855 (-) True CI01000072_02483888_02489835
CI01000072_02497534_02504872.mRNA mRNA upstream 131876 2497109 ~ 2505039 (-) True CI01000072_02497534_02504872
CI01000072_02508225_02525505.mRNA mRNA upstream 142420 2507653 ~ 2525761 (-) True CI01000072_02508225_02525505
CI01000072_02528257_02532888.mRNA mRNA upstream 162843 2528076 ~ 2532888 (-) True CI01000072_02528257_02532888
TU323875 other downstream 194187 2168048 ~ 2170658 (-) True G285752
TU323892 other downstream 356536 2005551 ~ 2008309 (-) True G285766
TU323812 other downstream 736950 1602289 ~ 1602443 (-) True G285697
TU323815 other downstream 736950 1594111 ~ 1627895 (-) True CI01000072_01596829_01610605
TU323625 other downstream 1009913 1335507 ~ 1354932 (-) True G285534
TU324139 other upstream 628536 2993769 ~ 2999495 (-) True G286005
TU324361 other upstream 1605037 3970270 ~ 3976002 (-) False G286205
TU324366 other upstream 1605037 3970270 ~ 3976067 (-) False G286205
TU324367 other upstream 1605037 3970270 ~ 3976002 (-) False G286205
TU324368 other upstream 1605037 3970270 ~ 3976002 (-) False G286205

Expression Profile