RNA id: TU324185



Basic Information


Item Value
RNA id TU324185
length 1180
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G286051
representative True

Chromosome Information


Item Value
chromosome id CI01000072
NCBI id null
chromosome length 5473029
location 2359687 ~ 2360866 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


AAAAATGATTTTCTAAAGTGTATATCTATTGTTTCATCATTTAAACCATGTCGTAACCTAATCTATTAATCACATACTTGCTGAAAGATGAAGTTTCCAAGACTCTGTTTGAGAACTGGACTGAAATAACACTTACTTTTCTCACAAGTCACAACCCTCTTCTCCCTTCCTCCATCCCCCTCAGCATTAGTCCAAACACAGACTCATATTTCATTATATTATCAAAATGATGACATCAGTGATATTAGGCCCTAGCGCTCTCTGAGTTTCTGAGATCACATGCAGCAGATTCCAGTCTAACCACAGTGTAGCACTGATCCCTGGGATTAAAGAGTCAGAACTGGAGACAGAGGTGTTTTGCAGTTGACTAATGATGACGGTGAGATTGGGGTTGTGGACAGCTGCTGGTTGGGTCCAAAGACTTCCTCATGTTTTGCTTTAGCTTAGTAAAGAGGCCTGTGGGTTTCAGTTTCTCCAGACCGGGATCATTTGACCGTGTGGGGATCTCCACACTGGGTAGGGTGGAGCTGAATTCTGGCTCAGTTACATTATTGTGGCAGCAGACCGCTGTCACTCTGTAATGAGATCTGCGTCACAGGCTTACACTTTAATGGATTTACTGCATAGTTTTCAGTCTGTGCATCATGCATTATTTCTTTGCAGTAACCAGTAAGATTTTTAAAAAAATAAATACTTTTATTCATGCAATAAAATTGCAAAAATCCTGAAAAACATGCATCATCATAATTTTCGCAAAACTGTTTTTAATAAAAATTAAAGGAAGAAATGTTACTTCAGCACCAATTCTGCATATTAGAATGATTTCTGAAGGATCATGTGACACTGAAGACTGGAGTAATGATGCTGAAAATTTATTTCTGTGATGACAAAACAGCTTTGCCATCCCAAGAATAAATTACATTTTAAAATAGAAAACAATTATTTTTAATTGTAATAATTTTGCACAATATTACACATTTTACACATATTTTTTGATCAAATAAATACAGCCTCGGTGAGCTTCTTTCATAAACATTTCAAAAAAATCGTACTGACCCCTTTATATTAGACAATATTTTAAAGGGTTAGTTCACCCATAAATGAAAATTATATCGTGAATTACTCACCCTCATGTCGTTCTACACCCGTAAGACCTTCATTCATCTTCGGAACACAAATT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU324184 lncRNA downstream 161 2359244 ~ 2359526 (-) True G286050
TU323862 lncRNA downstream 49675 2224278 ~ 2310012 (-) True G285741
TU323866 lncRNA downstream 173363 2186079 ~ 2186324 (-) True G285745
TU324030 lncRNA downstream 232296 2127077 ~ 2127391 (-) True G285903
TU324015 lncRNA downstream 289551 2069814 ~ 2070136 (-) True G285888
TU324084 lncRNA upstream 3979 2364845 ~ 2365233 (-) True G285953
TU324200 lncRNA upstream 18084 2378950 ~ 2379178 (-) True G286066
TU324202 lncRNA upstream 18904 2379770 ~ 2380333 (-) True G286068
TU324204 lncRNA upstream 20060 2380926 ~ 2381168 (-) True G286070
TU324208 lncRNA upstream 23683 2384549 ~ 2384759 (-) True G286074
CI01000072_02306739_02309704.mRNA mRNA downstream 49983 2306646 ~ 2309704 (-) True CI01000072_02306739_02309704
CI01000072_02074797_02106818.mRNA mRNA downstream 252814 2073987 ~ 2106873 (-) True CI01000072_02074797_02106818
CI01000072_02041267_02050950.mRNA mRNA downstream 306503 2040738 ~ 2053184 (-) True CI01000072_02041267_02050950
CI01000072_01987945_01988280.mRNA mRNA downstream 370914 1987274 ~ 1988773 (-) True CI01000072_01987945_01988280
CI01000072_01973002_01985111.mRNA mRNA downstream 374443 1972896 ~ 1985244 (-) True CI01000072_01973002_01985111
CI01000072_02400147_02401427.mRNA mRNA upstream 38903 2399769 ~ 2401427 (-) True CI01000072_02400147_02401427
CI01000072_02483888_02489835.mRNA mRNA upstream 122960 2483826 ~ 2489855 (-) True CI01000072_02483888_02489835
CI01000072_02497534_02504872.mRNA mRNA upstream 136243 2497109 ~ 2505039 (-) True CI01000072_02497534_02504872
CI01000072_02508225_02525505.mRNA mRNA upstream 146787 2507653 ~ 2525761 (-) True CI01000072_02508225_02525505
CI01000072_02528257_02532888.mRNA mRNA upstream 167210 2528076 ~ 2532888 (-) True CI01000072_02528257_02532888
TU323875 other downstream 189029 2168048 ~ 2170658 (-) True G285752
TU323892 other downstream 351378 2005551 ~ 2008309 (-) True G285766
TU323812 other downstream 731792 1602289 ~ 1602443 (-) True G285697
TU323815 other downstream 731792 1594111 ~ 1627895 (-) True CI01000072_01596829_01610605
TU323625 other downstream 1004755 1335507 ~ 1354932 (-) True G285534
TU324139 other upstream 632903 2993769 ~ 2999495 (-) True G286005
TU324361 other upstream 1609404 3970270 ~ 3976002 (-) False G286205
TU324366 other upstream 1609404 3970270 ~ 3976067 (-) False G286205
TU324367 other upstream 1609404 3970270 ~ 3976002 (-) False G286205
TU324368 other upstream 1609404 3970270 ~ 3976002 (-) False G286205

Expression Profile