RNA id: CI01000063_01915989_01944590.mRNA


Basic Information

Item Value
RNA id CI01000063_01915989_01944590.mRNA
length 1807
RNA type mRNA
GC content 0.48
exon number 7
gene id CI01000063_01915989_01944590
representative True

Chromosome Information

Item Value
chromosome id CI01000063
NCBI id null
chromosome length 7808773
location 1915423 ~ 1944590 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATGAACAGAAGGAGTGGAGCGGGCCTTTTTATTTCATCCAGGCTGCAGACCCTCAGCTGGGCCTAATGAAGGCATGGAGGATTGGTGACTGCGATTCAGGAGGCGATGAGTGGACTGAGGAGGTCCAGCTCACAAAGCAGGCAGTCCAGGCCATCAACAAACTACAGCCCAGACCTCGCTTCATGGTCCTGTGTGGAGACCTGGTCCACGCTATGCCTGGTGAGTTGGTCCCCTTGATTGGGAGACCTGAGGTCATTACCCTGGGCATTGGTAGGCTGCGAGTTAGCGTAGTTGCACTTGCTGTTGGCATGCGGAGGCTTGACCGCATTTGCACCGCCATGGTTCCTGACGCGGTCCAAGTTGTAAGCCATTCTACCTCCTGCGTTCTGCCAGTCATAATGAACAGTGAGCGGCAGCATGTTGGACAAGCAAAGTTCCACGCTGTAATTGAAGGGCCGCTCCGTGATATCGGCACAGAATCCTTCCTTGTGTGTGCTGCGGTAGGGGACATTTCAGAAGGAAATGAGTTCAGAGAAGAACAAGTTAAGGACCTCAAAGAAGCACTGAGAGGCACTGACCCCACCATTCCTCTTGTGTTCGTCAGCGGCAACCACGACCTTGGCAACACACCCACTCCGGACACCGTGGAGCAGTTCTGCCGTGACTGGGGCGATGATTACTTCAGTTTTTGGGTGGGTGGGGTCTTGTGTTTGGTGTTGAACTCTCAGTTCTTCTTCGACTCATCAGGCTGCCCTGAGTTAATGGAGGCCCACGAGGTCTGGCTGGAGAGCCAGCTGCAGAGAGCCATCCAGACCCCCTCCCACCACGTGCTTGTCTTCCAGCACATTCCGCTCTTCCTCCGTACACCTGACGAAGAGGATGACTACTTCAACCTGCAGAGGGGAATCAGAGAGCGCTTGATCCAGAGATTCAAACAGGCAGAAAAAAGTAAATCCACTGGGTTGAGGGTTATGTTAGCCATGAGGGGAAAAATACTGATCTTCCTTTGTTCCAAAGGGGTGAAAGCTGTGTTCTCTGGTCACTACCACAGAAATGCAGGAGGATGCCATGATGGGCTGGATATGGTGGTGAGCTCTGCAGTCGGTTGTCAGTTGGGGAATGACACTCACGGTGTGCGAGTGGTGGTAGTTACTGAAGATTACATCATCCATCGCTACCATAGTCTGGATCAATTAACCGAAAGAGGAATGGATGAAGACCTGAAGAAATTGTTGGTTTAAAACCACCTCCAGATCAATAATCATGTGGTTGTGTCCTCATCTTCAACATTCATAATAGAAACTGAGCCGTTGTTAGTACATTTAGAGTTTTTTTTTTTTTTTTTTTTACAGGAACAAAAAGAGTCTTATGTTCTGTATACATTAGCAAGCATTAAAAAATTTGAACCAGTGGCACTTTTGATCTTTGATACTCACATCATCTGTCTCCACGTTTTAATCATGCAAATGTGTCTGAGAATTCCTTAAACAGTGAAGTTAAATCACCTCATCATACTAATGGAGTGAGGAGATGCTAGGGTGCAATGGTAGTTTAATAGTGCTGAACATTTTGGATGACAGTTTGATGAGTTCACTCCTTGCTCCTCTCTGCTCATTACGCTGTTCTGTCTCTGAGAGGAGGGAAGAGGCAATCTCCATGGTAACTATTGAAAGACATGACTGCGTTGACCGGGACATCGAGTCACTTGTACTGTGGGTGGATCACTGAAAACATAATTGCTGACCTCACCTCACACTTGGACGATTGCAGCCGGGTGTGACTTTGACGGCAGGCATACAGCAATAAA

Function

GO:

id name namespace
GO:0005737 cytoplasm cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU298945 lncRNA downstream 5053 1910148 ~ 1910370 (-) True G263356
TU298939 lncRNA downstream 13882 1901329 ~ 1901541 (-) True G263350
TU298827 lncRNA downstream 60037 1855014 ~ 1855386 (-) True G263256
TU298789 lncRNA downstream 61301 1849945 ~ 1854122 (-) True G263218
TU298934 lncRNA downstream 71888 1843298 ~ 1843535 (-) True G263345
TU298831 lncRNA upstream 5257 1949847 ~ 1988854 (-) True G263260
TU298983 lncRNA upstream 51176 1995766 ~ 1996104 (-) True G263394
TU298994 lncRNA upstream 75773 2020363 ~ 2020602 (-) True G263405
TU298765 lncRNA upstream 408592 2353182 ~ 2356169 (-) True G263201
TU298774 lncRNA upstream 422431 2367021 ~ 2369202 (-) False G263207
CI01000063_01890725_01899483.mRNA mRNA downstream 15877 1890392 ~ 1899546 (-) True CI01000063_01890725_01899483
CI01000063_01856270_01877031.mRNA mRNA downstream 38328 1856245 ~ 1877095 (-) True CI01000063_01856270_01877031
CI01000063_01809470_01817028.mRNA mRNA downstream 98395 1809395 ~ 1817028 (-) True CI01000063_01809470_01817028
CI01000063_01802070_01805063.mRNA mRNA downstream 109948 1801702 ~ 1805475 (-) True CI01000063_01802070_01805063
CI01000063_01682341_01683245.mRNA mRNA downstream 232178 1682279 ~ 1683245 (-) True CI01000063_01682341_01683245
CI01000063_02032344_02033792.mRNA mRNA upstream 86938 2031528 ~ 2033999 (-) True CI01000063_02032344_02033792
CI01000063_02041246_02172429.mRNA mRNA upstream 96656 2041246 ~ 2172429 (-) True CI01000063_02041246_02172429
CI01000063_02174216_02175916.mRNA mRNA upstream 229323 2173913 ~ 2176162 (-) True CI01000063_02174216_02175916
CI01000063_02177769_02178239.mRNA mRNA upstream 233157 2177747 ~ 2178395 (-) False CI01000063_02177769_02178239
CI01000063_02180702_02195010.mRNA mRNA upstream 236094 2180684 ~ 2195350 (-) True CI01000063_02180702_02195010
TU298670 other downstream 245347 1669411 ~ 1670076 (-) True CI01000063_01669384_01670016
TU298810 other upstream 231849 2176439 ~ 2177485 (-) True G263239
TU298801 other upstream 380522 2325112 ~ 2327719 (-) True G263230
TU298806 other upstream 781169 2725759 ~ 2726535 (-) True CI01000063_02725759_02726399
TU301418 other upstream 3217904 5183279 ~ 5183287 (-) True G265567
TU301411 other upstream 3243813 5190050 ~ 5190617 (-) True G265565

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00009248 False 2147 mRNA 0.43 4 NC_007123.7 19866865 ~ 19932623 (+)