RNA id: TCONS_00009248


Basic Information

Item Value
RNA id TCONS_00009248
length 2147
RNA type mRNA
GC content 0.43
exon number 4
gene id XLOC_004671
representative False

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 19866865 ~ 19932623 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AATACATCACTAAACGCATCGATTTACGAGCAGGAACTAACGATTTAGTCAGTATTAGTGCACAGAACGCCCTTATTTCGTGACCAAACAGGGAAACGAAAGTCCATAACCAGTTTAAACCTCGCTTTTTATTACTGTGTCTATCGCGTTTCAATGGCAGCCGACGAAAGCGTTTTTCTGAGGGCGAAGGACCGGAGTTATAAGGGGCTTACAGAAGATGAACAGAAGGAATGGAGCGGGCCCTTTTATTTCATCCAGGCTGCAGACCCACAGCTTGGCCTGATGAAGGCATGGAGGATTGGTGATTGTGATTCAGGAGGCGATGAGTGGGATGAAGAGGTCCAGCTCACAAAGCAGGCAGTGCAGGCCATCAACAAACTCCAGCCCAAACCTCGCTTCATAGTGCTGTGTGGAGATCTGGTCCATGCTATGCCAGgAAGTCCGTTCAGAGAACAGCAGATAAAGGACCTGAAAGATGCCCTGCGAGGCACCGACCCGCACATTCCTCTTGTGTTCGTCAGCGGAAACCACGACCTCGGCAATGCTCCCACTCCAGACACTGTGGAGCAGTTCTGCCACGAATGGGGCGATGATTACTTCAGTTTTTGGGTGGGTGGCGTGCTGTGCCTGGTGTTGAACTCTCAGTTCTTTTTTGACTCATCAGGCTGTCCTGAGTTAATGGAGGCCCATGAGGTCTGGCTGGAGAACCGGTTACAGATGGCAGTTCAGACCCCGTCTCGACATGTGCTTGTCTTCCAGCACATTCCACTCTTCCTTCGCACCCCTGATGAAGAAGACGACTATTTCAACCTGCAGAGGGGGATCAGAGAGCACTTGATCCAGAGATTCAAACGGGCAGGGGTGAAAGCTGTGTTTTCCGGCCACTACCACAGGAATGCAGGAGGATGCCATGATGGACTGGATATGGTGGTGAGCTCAGCAGTTGGTTGTCAGTTAGGAGATGACACTCATGGTGTTCGAGTGGTGGTAGTCACTGAAAACAACATCATCCATCGCTACCATAGTCTTGACCAGTTATCTAAAAGAGGAATGGATGAAGACCTGAAGAAATTGCTGCTTTAAATTTACGCCAGTAATCAAATGGCTGTATCTCCATACTCAACAGAAAAGCGAGAcattatttgtacatttaaaacattcaggtgttttttttttttatacaagatTTGCGTTCGGAATACATTAGCAAGCATTAAAATCTCAAACCAGTTTGATCTTTGATACTCGCGTCATCTGTCTCCACACTTTAATCATGCAAATGTCTCTGAGAATTCCTTAAACACTGGAGTTAAATCACCTCATCATAGTAATGGAGTGAGGAGATGCTAGGGTACAATGGTAGTTTAATAGCGCTGAACATTTTGGATGACAGTTTGATGAGTTCACTCCTTGCTCCTCTCTGCTCATTACTCTTTTCCGTCTCGGAGAGGAGGAAAGAGGCAATCTCCATGGCAACGATTGAAAGACGTGGCAGCGGTGACCGGGACATCGAGTCACTTGTTCTGTGGGTGGATCACCAAAAACATAATTGCTGACCTCACCTCACACTTGGACTCAGAAGCGTCGAAAGTAGCTGAAATGTTTGACTGATAATCTTAGGCTGCGTCGATGGAGAAAGTAAggccttttttttgtttgtttgaattctgcccgtgacctcataactttcctTAGCAGTGTCATGTTAAAATGAAACAAGATGTTTTCCAGTTTTCTCAGGATATAGTCATGTAATATTGATGTGTAATGTCTAATGCTGTGATCATACTAGAAGGGGttcaaaagtttaaagttttgtCATGAATTATGCAGTTGACATTCAGTTTCAGCGGAAAGTTAAATGAAAAGTGATGACATGATTTTGGGAATGTCTTCGAATTTGATTTATGCTGTTTAATGATGGTGCTGCGTGAACATCTGACTATCTGTGCAGAGGAGTTCCTATGATTAGCTTTGCTAATTTACGGTGACATTTTATAATATTCATAACATGAactgtaatttattaattaaccTTTAAATTCACGATTTGTTCTTTCCATGTTCACTACataaattaatgttaacaaatacagctgtactgtattttaaatgacaagaaaactaattaaaatctatatGTCTAA

Function

GO:

id name namespace
GO:0005737 cytoplasm cellular_component
GO:0046872 metal ion binding molecular_function
GO:0016787 hydrolase activity molecular_function
GO:0004721 phosphoprotein phosphatase activity molecular_function

KEGG:

id description
ko01009 Protein phosphatases and associated proteins

ZFIN:

id description
ZDB-GENE-041114-118 Predicted to enable metal ion binding activity; protein serine phosphatase activity; and protein threonine phosphatase activity. Predicted to be located in cytoplasm. Orthologous to human CPPED1 (calcineurin like phosphoesterase domain containing 1).

Ensembl:

ensembl_id ENSDART00000045609

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00010733 lncRNA upstream 407580 19458809 ~ 19459285 (+) True XLOC_004670
TCONS_00009244 lncRNA upstream 478487 19385438 ~ 19388378 (+) True XLOC_004666
TCONS_00010732 lncRNA upstream 595709 19267759 ~ 19271156 (+) True XLOC_004660
TCONS_00009224 lncRNA upstream 726214 19139343 ~ 19140651 (+) True XLOC_004655
TCONS_00010915 lncRNA upstream 998890 18861278 ~ 18867975 (+) True XLOC_004648
TCONS_00010916 lncRNA downstream 330962 20263585 ~ 20265465 (+) True XLOC_004675
TCONS_00009263 lncRNA downstream 411266 20343889 ~ 20346635 (+) False XLOC_004677
TCONS_00010917 lncRNA downstream 411276 20343899 ~ 20346635 (+) False XLOC_004677
TCONS_00010919 lncRNA downstream 558996 20491619 ~ 20500564 (+) False XLOC_004679
TCONS_00010918 lncRNA downstream 558996 20491619 ~ 20500564 (+) False XLOC_004679
TCONS_00009247 mRNA upstream 207609 19408373 ~ 19659256 (+) True XLOC_004669
TCONS_00009246 mRNA upstream 463915 19401854 ~ 19402950 (+) True XLOC_004668
TCONS_00009242 mRNA upstream 472897 19384615 ~ 19393968 (+) False XLOC_004666
TCONS_00009240 mRNA upstream 482920 19362335 ~ 19383945 (+) False XLOC_004665
TCONS_00009241 mRNA upstream 484470 19362547 ~ 19382395 (+) True XLOC_004665
TCONS_00009251 mRNA downstream 26222 19958845 ~ 19975373 (+) False XLOC_004672
TCONS_00009252 mRNA downstream 26414 19959037 ~ 19974532 (+) True XLOC_004672
TCONS_00009253 mRNA downstream 43777 19976400 ~ 20045101 (+) True XLOC_004673
TCONS_00009254 mRNA downstream 189633 20122256 ~ 20149558 (+) False XLOC_004674
TCONS_00009255 mRNA downstream 189848 20122471 ~ 20147764 (+) False XLOC_004674
TCONS_00009245 other upstream 478592 19388143 ~ 19388273 (+) True XLOC_004667
TCONS_00009243 other upstream 481310 19385426 ~ 19385555 (+) False XLOC_004666
TCONS_00009203 other upstream 1167243 18681423 ~ 18699622 (+) False XLOC_004646
TCONS_00009200 other upstream 1267901 18598850 ~ 18598964 (+) True XLOC_004644
TCONS_00009179 other upstream 1741091 18125658 ~ 18125774 (+) True XLOC_004634
TCONS_00009270 other downstream 566360 20498983 ~ 20499080 (+) True XLOC_004679
TCONS_00009286 other downstream 758735 20691358 ~ 20692013 (+) False XLOC_004688
TCONS_00009295 other downstream 1504723 21437346 ~ 21437458 (+) True XLOC_004691
TCONS_00009299 other downstream 1861379 21794002 ~ 21794116 (+) True XLOC_004694
TCONS_00009304 other downstream 2511006 22443629 ~ 22444772 (+) True XLOC_004697

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000063_01915989_01944590.mRNA True 1807 mRNA 0.48 7 CI01000063 1915423 ~ 1944590 (-)