RNA id: TCONS_00010733


Basic Information

Item Value
RNA id TCONS_00010733
length 477
lncRNA type intronic
GC content 0.36
exon number 1
gene id XLOC_004670
representative True

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 19458809 ~ 19459285 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AGCAACATGCACAgggacacacacatgcatgcacacacacatattgttcCATGGAACAGCCTTATTAAACTTTGTGTAAAGCTGTTGGTGGAATTGAATTCGGTGGGGGGCTTGATGTGGGAGTCTCTCAGTTGGCTCCTTGTGTTTACTGCTCATACATCCTGAATGTCAGGATAATGGTGGATGATATATCATGATGTGCTAAAATTGTGTGCATTCAGTTCTATCTGTAATCaagatttgtttctgttttatgttctGCAAAATGCAAGCTGATATTACAAATAATGAAAACAGTAAATTAATGTTTTCTGCTCATCAATTGAATAGCAATTTATCACACTTGGGGACAGATTAACTAACAGCAAACTGTCTTTTTGGTgttaagggatagtttacccttCAGgagtcatttactcactcttgtttCAAACActtgagttttttcttctgttgaatataaaagaagatattttg

Function

GO:

id name namespace
GO:0010467 gene expression biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0045934 negative regulation of nucleobase-containing compound metabolic process biological_process
GO:0032039 integrator complex cellular_component
GO:0044424 obsolete intracellular part cellular_component
GO:0044428 obsolete nuclear part cellular_component
GO:0005622 intracellular anatomical structure cellular_component
GO:0043227 membrane-bounded organelle cellular_component
GO:0043229 intracellular organelle cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component
GO:0046966 thyroid hormone receptor binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00009244 lncRNA upstream 70431 19385438 ~ 19388378 (+) True XLOC_004666
TCONS_00010732 lncRNA upstream 187653 19267759 ~ 19271156 (+) True XLOC_004660
TCONS_00009224 lncRNA upstream 318158 19139343 ~ 19140651 (+) True XLOC_004655
TCONS_00010915 lncRNA upstream 590834 18861278 ~ 18867975 (+) True XLOC_004648
TCONS_00009195 lncRNA upstream 914188 18543792 ~ 18544621 (+) False XLOC_004641
TCONS_00010916 lncRNA downstream 804300 20263585 ~ 20265465 (+) True XLOC_004675
TCONS_00009263 lncRNA downstream 884604 20343889 ~ 20346635 (+) False XLOC_004677
TCONS_00010917 lncRNA downstream 884614 20343899 ~ 20346635 (+) False XLOC_004677
TCONS_00010919 lncRNA downstream 1032334 20491619 ~ 20500564 (+) False XLOC_004679
TCONS_00010918 lncRNA downstream 1032334 20491619 ~ 20500564 (+) False XLOC_004679
TCONS_00009246 mRNA upstream 55859 19401854 ~ 19402950 (+) True XLOC_004668
TCONS_00009242 mRNA upstream 64841 19384615 ~ 19393968 (+) False XLOC_004666
TCONS_00009240 mRNA upstream 74864 19362335 ~ 19383945 (+) False XLOC_004665
TCONS_00009241 mRNA upstream 76414 19362547 ~ 19382395 (+) True XLOC_004665
TCONS_00009239 mRNA upstream 96623 19356623 ~ 19362186 (+) True XLOC_004664
TCONS_00009248 mRNA downstream 407580 19866865 ~ 19932623 (+) False XLOC_004671
TCONS_00009251 mRNA downstream 499560 19958845 ~ 19975373 (+) False XLOC_004672
TCONS_00009252 mRNA downstream 499752 19959037 ~ 19974532 (+) True XLOC_004672
TCONS_00009253 mRNA downstream 517115 19976400 ~ 20045101 (+) True XLOC_004673
TCONS_00009254 mRNA downstream 662971 20122256 ~ 20149558 (+) False XLOC_004674
TCONS_00009245 other upstream 70536 19388143 ~ 19388273 (+) True XLOC_004667
TCONS_00009243 other upstream 73254 19385426 ~ 19385555 (+) False XLOC_004666
TCONS_00009203 other upstream 759187 18681423 ~ 18699622 (+) False XLOC_004646
TCONS_00009200 other upstream 859845 18598850 ~ 18598964 (+) True XLOC_004644
TCONS_00009179 other upstream 1333035 18125658 ~ 18125774 (+) True XLOC_004634
TCONS_00009249 other downstream 407713 19866998 ~ 19904415 (+) False XLOC_004671
TCONS_00009250 other downstream 418557 19877842 ~ 19896927 (+) True XLOC_004671
TCONS_00009270 other downstream 1039698 20498983 ~ 20499080 (+) True XLOC_004679
TCONS_00009286 other downstream 1232073 20691358 ~ 20692013 (+) False XLOC_004688
TCONS_00009295 other downstream 1978061 21437346 ~ 21437458 (+) True XLOC_004691

Expression Profile

//