XLOC_004671 (cpped1)


Basic Information

Item Value
gene id XLOC_004671
gene name cpped1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 19866865 ~ 19932623 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00009248
AATACATCACTAAACGCATCGATTTACGAGCAGGAACTAACGATTTAGTCAGTATTAGTGCACAGAACGCCCTTATTTCGTGACCAAACAGGGAAACGAAAGTCCATAACCAGTTTAAACCTCGCTTTTTATTACTGTGTCTATCGCGTTTCAATGGCAGCCGACGAAAGCGTTTTTCTGAGGGCGAAGGACCGGAGTTATAAGGGGCTTACAGAAGATGAACAGAAGGAATGGAGCGGGCCCTTTTATTTCATCCAGGCTGCAGACCCACAGCTTGGCCTGATGAAGGCATGGAGGATTGGTGATTGTGATTCAGGAGGCGATGAGTGGGATGAAGAGGTCCAGCTCACAAAGCAGGCAGTGCAGGCCATCAACAAACTCCAGCCCAAACCTCGCTTCATAGTGCTGTGTGGAGATCTGGTCCATGCTATGCCAGgAAGTCCGTTCAGAGAACAGCAGATAAAGGACCTGAAAGATGCCCTGCGAGGCACCGACCCGCACATTCCTCTTGTGTTCGTCAGCGGAAACCACGACCTCGGCAATGCTCCCACTCCAGACACTGTGGAGCAGTTCTGCCACGAATGGGGCGATGATTACTTCAGTTTTTGGGTGGGTGGCGTGCTGTGCCTGGTGTTGAACTCTCAGTTCTTTTTTGACTCATCAGGCTGTCCTGAGTTAATGGAGGCCCATGAGGTCTGGCTGGAGAACCGGTTACAGATGGCAGTTCAGACCCCGTCTCGACATGTGCTTGTCTTCCAGCACATTCCACTCTTCCTTCGCACCCCTGATGAAGAAGACGACTATTTCAACCTGCAGAGGGGGATCAGAGAGCACTTGATCCAGAGATTCAAACGGGCAGGGGTGAAAGCTGTGTTTTCCGGCCACTACCACAGGAATGCAGGAGGATGCCATGATGGACTGGATATGGTGGTGAGCTCAGCAGTTGGTTGTCAGTTAGGAGATGACACTCATGGTGTTCGAGTGGTGGTAGTCACTGAAAACAACATCATCCATCGCTACCATAGTCTTGACCAGTTATCTAAAAGAGGAATGGATGAAGACCTGAAGAAATTGCTGCTTTAAATTTACGCCAGTAATCAAATGGCTGTATCTCCATACTCAACAGAAAAGCGAGAcattatttgtacatttaaaacattcaggtgttttttttttttatacaagatTTGCGTTCGGAATACATTAGCAAGCATTAAAATCTCAAACCAGTTTGATCTTTGATACTCGCGTCATCTGTCTCCACACTTTAATCATGCAAATGTCTCTGAGAATTCCTTAAACACTGGAGTTAAATCACCTCATCATAGTAATGGAGTGAGGAGATGCTAGGGTACAATGGTAGTTTAATAGCGCTGAACATTTTGGATGACAGTTTGATGAGTTCACTCCTTGCTCCTCTCTGCTCATTACTCTTTTCCGTCTCGGAGAGGAGGAAAGAGGCAATCTCCATGGCAACGATTGAAAGACGTGGCAGCGGTGACCGGGACATCGAGTCACTTGTTCTGTGGGTGGATCACCAAAAACATAATTGCTGACCTCACCTCACACTTGGACTCAGAAGCGTCGAAAGTAGCTGAAATGTTTGACTGATAATCTTAGGCTGCGTCGATGGAGAAAGTAAggccttttttttgtttgtttgaattctgcccgtgacctcataactttcctTAGCAGTGTCATGTTAAAATGAAACAAGATGTTTTCCAGTTTTCTCAGGATATAGTCATGTAATATTGATGTGTAATGTCTAATGCTGTGATCATACTAGAAGGGGttcaaaagtttaaagttttgtCATGAATTATGCAGTTGACATTCAGTTTCAGCGGAAAGTTAAATGAAAAGTGATGACATGATTTTGGGAATGTCTTCGAATTTGATTTATGCTGTTTAATGATGGTGCTGCGTGAACATCTGACTATCTGTGCAGAGGAGTTCCTATGATTAGCTTTGCTAATTTACGGTGACATTTTATAATATTCATAACATGAactgtaatttattaattaaccTTTAAATTCACGATTTGTTCTTTCCATGTTCACTACataaattaatgttaacaaatacagctgtactgtattttaaatgacaagaaaactaattaaaatctatatGTCTAA
>TCONS_00009249
ACTGTGTCTATCGCGTTTCAATGGCAGCCGACGAAAGCGTTTTTCTGAGGGCGAAGGACCGGAGTTATAAGGGGCTTACAGAAGATGAACAGAAGGAATGGAGCGGGCCCTTTTATTTCATCCAGGCTGCAGACCCACAGCTTGGCCTGATGAAGGCATGGAGGATTGGTGATTGTGATTCAGGAGGCGATGAGTGGGATGAAGAGGTCCAGCTCACAAAGCAGGCAGTGCAGGCCATCAACAAACTCCAGCCCAAACCTCGCTTCATAGTGCTGTGTGGAGATCTGGTCCATGCTATGCCAGGATCATCGATCCTTCCCTGGTTCCTTCTTCTTCATTACTCTCTACCAGACCATGAGAAACTTTTAATACACTTCAGAATGTTCATTCACGGATTTACACAAAGGCATACTAGACACAACATATTACTAGAGAAGTGTCAAGTGtgacaa
>TCONS_00009250
AGATGAACAGAAGGAATGGAGCGGGCCCTTTTATTTCATCCAGGCTGCAGACCCACAGCTTGGCCTGATGAAGGCATGGAGGATTGGTGATTGTGATTCAGGAGGCGATGAGTGGGATGAAGAGGTCCAGCTCACAAAGCAGGCAGTGCAGGCCATCAACAAACTCCAGCCCAAACCTCGCTTCATAGTGCTGTGTGGAGATCTGGTCCATGCTATGCCAGCCATTCAATCTCCTGCGTTCTGCCAGCCGTAATGAACAGTGAGCGGCAGCGTGTTGGACAAGCTAAGTTCTGCACGGTAATTGAAGGGCCGCTTCATGATATCGGCACCGAACCCTTTTGAGCTTTCCGGTTCAAGGACTTCTCCTGGCTGCCAGCGGGAGAGATCATCGAGGGAGGTGATTAGATTTGGAGAGCACTGAACCTGATGCTTTTCTTCAGGGGACTATAAAAACCTTTGCCTGATGCCTGTAGCCTTGCCTGTGCTGTGGTGGGGGACATTTCAGA

Function

symbol description
cpped1 Predicted to enable metal ion binding activity; protein serine phosphatase activity; and protein threonine phosphatase activity. Predicted to be located in cytoplasm. Orthologous to human CPPED1 (calcineurin like phosphoesterase domain containing 1).

GO:

id name namespace
GO:0005737 cytoplasm cellular_component
GO:0046872 metal ion binding molecular_function
GO:0016787 hydrolase activity molecular_function
GO:0004721 phosphoprotein phosphatase activity molecular_function

KEGG:

id description
ko01009 Protein phosphatases and associated proteins

ZFIN:

id description
ZDB-GENE-041114-118 Predicted to enable metal ion binding activity; protein serine phosphatase activity; and protein threonine phosphatase activity. Predicted to be located in cytoplasm. Orthologous to human CPPED1 (calcineurin like phosphoesterase domain containing 1).

Ensembl:

ensembl_id ENSDARG00000031968

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00009248 False 2147 mRNA 0.43 4 19866865 19932623
TCONS_00009249 False 452 processed_transcript 0.48 3 19866998 19904415
TCONS_00009250 True 506 processed_transcript 0.52 2 19877842 19896927

Neighbor

gene id symbol gene type direction distance location
XLOC_004669 snx29 coding upstream 207609 19408373 ~ 19659256 (+)
XLOC_004670 NA coding upstream 407580 19458809 ~ 19459285 (+)
XLOC_004668 si:dkey-16i5.8 coding upstream 463915 19401854 ~ 19402950 (+)
XLOC_004666 rsl1d1 coding upstream 472897 19384615 ~ 19393968 (+)
XLOC_004667 BX649366.2 coding upstream 478592 19388143 ~ 19388273 (+)
XLOC_004672 ercc4 coding downstream 26222 19958845 ~ 19975373 (+)
XLOC_004673 mrtfba coding downstream 43777 19976400 ~ 20045101 (+)
XLOC_004674 mgrn1a coding downstream 189633 20122256 ~ 20157014 (+)
XLOC_004675 NA coding downstream 330962 20263585 ~ 20265465 (+)
XLOC_004676 zgc:163057 coding downstream 403447 20336070 ~ 20337274 (+)
XLOC_004660 NA non-coding upstream 595709 19267759 ~ 19271156 (+)
XLOC_004648 NA non-coding upstream 998890 18861278 ~ 18867975 (+)
XLOC_004644 AL772266.2 non-coding upstream 1267901 18598850 ~ 18598964 (+)
XLOC_004679 NA non-coding downstream 558996 20491619 ~ 20504801 (+)
XLOC_004689 NA non-coding downstream 874274 20806897 ~ 21106987 (+)
XLOC_004691 FO704814.1 non-coding downstream 1504723 21437346 ~ 21437458 (+)
XLOC_004694 NA non-coding downstream 1825194 21757817 ~ 21799396 (+)

Expression


Co-expression Network