XLOC_004666 (rsl1d1)


Basic Information

Item Value
gene id XLOC_004666
gene name rsl1d1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 19384615 ~ 19393968 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00009242
ctgaCGTTTACCTTAGATCTGCGCATGCTCTTTTTGCTCTTTCGCCACACGTGCAGCATGGAGACCCCACGAGATGAGTTGACTATCGATCAGTCTCAGGTGAAAAAAGCAGCACAGGCATTACAGGCGTTTATAAAAAACAGCACATCGTCCCAGAAACTCTTCCAGAATGACGGTCAGCCCATCTCTCTACTTTTTACCTTATGGAAGATTCCTAAAAAGGAGCAAACCATTCGCATTCCGTTATCTCATGGACTGAGGACAGAATCTGGAGACGTGTGTCTTTTCACCAGAGATGAACCCAACATGACTGCAGAACAGACAGAGAGATTCTACAAGAAGTTACTCACAGAGAGAGGGGTCAAAAATGTCACAGAGGTGATTCCCTTCAAGGCATTGAGGACCGAGTATAAGCCATTTGAAGCAAAGAGAAAACTGCTTGGCAACTTTGATTTGTTCCTGTCAGACGCACGCATTCGGTTCAGGTTACCTTCCCAAATTGGGAAACATTTCTATGAAAGGaaaaaGGCTCCTTTGTCAGTGGATCTAGAGAGTAAACATCTGGCCAGAGACATGGAGCGCCTCATTCAGGGCACAACTCTCACCGTCTCAACTAAAGGCCCTTGCTGCATGGCCCGTGTGGCACATTCAGAAATGACAGCAGATCAGATTGTTGAGAATGTGATCTCAGCCGTTTCCACAATTTCAGCAAAGTTAGCATCAACaggaaaaaacataaaaatcatcCATTTGAAGAGTCAGACATCAGTAGCGCTACCCATCTACACCTCTGATCTGAGTCATCTCGCGTTGGTGGAGGAGGCCCAGAAGAAAGCCCGTTTAACAAAGgGAGCGCAAAAGAGGAAGAGAAAAACTGAAAATACAGAAGCGCCCAAACCAGTAACTAAAGAGACTGAGGAAGAGAAAGACAGCGAAGAGGAAATACCACAGCTGGTGCCAATCGAGACGccaaagaaaaagacaaaacgGGAGggcCTATCTAAAAAAGGACTGAAAAAAGTGCCCAAGCCTGCTGCTGGCAACAGTGTGAAGAAATCTGTAAAGGACAAAAAACTTGTCAAGAAAACACCCAAACGCACAGAACGtggtctggaaaaaaaaaagctaaaaacaaataaaacctgaAATGCAATTATCATGCAGCTTTCCCTCTGTTAACCATTTACATAGATgtattattaaacaatatttcgTATCTCACAGTTGTCACAAGGTTCTTGTAAACCTTTTGTTCTGGTGAAATTAACAGTCAATTAAAAGAATTCAAAATCTGA
>TCONS_00009243
GCACTTCTGCAAACCCTGTCCTTCTGTGTCAGTGCTGGGCACGGGTTTAAAAGTGCTAAAGTACCTCAGAGTGCATCCAGACAAGTCTCCTCTTCTATTGGCGCTTGTCTCTACAAACTTTGAAACAAGC
>TCONS_00009244
ACCCTGTCCTTCTGTGTCAGTGCTGGGCACGGGTTTAAAAGTGCTAAAGTACCTCAGAGTGCATCCAGACAAGTCTCCTCTTCTATTGGCGCTTGTCTCTACAAACTTTGAAACAAGCTAAACTTTCCGAGCATGTGCATTTTATGACATTGAAGATCAtgtatatgttttaatattaatattatattttctgTTATTAGGTGATTCCCTTCAAGGCATTGAGGACCGAGTATAAGCCATTTGAAGCAAAGAGAAAACTGCTTGGCAACTTTGATTTGTTCCTGTCAGACGCACGCATTCGGTTCAGGTTACCTTCCCAAATTGGGAAACATTTCTATGAAAGGaaaaaGGCTCCTTTGTCAGTGGATCTAGAGAGTAAACATCTGGCCAGAGACATGGAGCGCCTCATTCAGGGCACAACTCTCACCGTCTCAACTAAAGGCCCTTGCTGCATGGCCCGTGTGGCACATTCA

Function

symbol description
rsl1d1 Predicted to enable RNA binding activity. Predicted to be involved in maturation of LSU-rRNA. Predicted to be part of 90S preribosome. Orthologous to human RSL1D1 (ribosomal L1 domain containing 1).

GO:

id name namespace
GO:0000470 maturation of LSU-rRNA biological_process
GO:0030686 90S preribosome cellular_component
GO:0003723 RNA binding molecular_function

KEGG:

id description
ko03009 Ribosome biogenesis

ZFIN:

id description
ZDB-GENE-130603-67 Predicted to enable RNA binding activity. Predicted to be involved in maturation of LSU-rRNA. Predicted to be part of 90S preribosome. Orthologous to human RSL1D1 (ribosomal L1 domain containing 1).

Ensembl:

ensembl_id ENSDARG00000055868 ENSDARG00000084034

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00009242 False 1295 mRNA 0.43 9 19384615 19393968
TCONS_00009243 False 130 snoRNA 0.48 1 19385426 19385555
TCONS_00009244 True 473 lncRNA 0.43 3 19385438 19388378

Neighbor

gene id symbol gene type direction distance location
XLOC_004665 gspt1 coding upstream 670 19362335 ~ 19383945 (+)
XLOC_004664 dmc1 coding upstream 22429 19356623 ~ 19362186 (+)
XLOC_004663 tomm22 coding upstream 30844 19348538 ~ 19353771 (+)
XLOC_004662 csnk1e coding upstream 44395 19305390 ~ 19340220 (+)
XLOC_004661 tnrc6b coding upstream 82627 19281189 ~ 19301988 (+)
XLOC_004668 si:dkey-16i5.8 coding downstream 7886 19401854 ~ 19402950 (+)
XLOC_004669 snx29 coding downstream 14405 19408373 ~ 19659256 (+)
XLOC_004670 NA coding downstream 64841 19458809 ~ 19459285 (+)
XLOC_004671 cpped1 coding downstream 472897 19866865 ~ 19932623 (+)
XLOC_004672 ercc4 coding downstream 564877 19958845 ~ 19975373 (+)
XLOC_004660 NA non-coding upstream 113459 19267759 ~ 19271156 (+)
XLOC_004648 NA non-coding upstream 516640 18861278 ~ 18867975 (+)
XLOC_004644 AL772266.2 non-coding upstream 785651 18598850 ~ 18598964 (+)
XLOC_004635 NA non-coding upstream 1156611 18209871 ~ 18228004 (+)
XLOC_004634 BX005075.1 non-coding upstream 1258841 18125658 ~ 18125774 (+)
XLOC_004675 NA non-coding downstream 869617 20263585 ~ 20265465 (+)
XLOC_004679 NA non-coding downstream 1097651 20491619 ~ 20504801 (+)
XLOC_004689 NA non-coding downstream 1412929 20806897 ~ 21106987 (+)
XLOC_004691 FO704814.1 non-coding downstream 2043378 21437346 ~ 21437458 (+)

Expression


Co-expression Network