XLOC_004660


Basic Information

Item Value
gene id XLOC_004660
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 19267759 ~ 19271156 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00010732
CCTAAAACCAACAAATGGACCATTGTGTCGTCCTTCATTCTTTCACCGTTAGCGTCTCAGTCAACCAAGATTTTGTCCCAATAACACTGCATCATGATACTCATCTCCATCCTTCAGCTGAAATTCAGAGAAGTAATAATTCACTGGCAGACTCAGACGGTCTGGTTGTTATGTGGTTACTGGAGCAACAGGACTTTTGGAGGACCAGGCCGGAGCCTGCGGCTGCTGGGCTGCTGTGTGTGAAGGCCTGTCGCTCTGTGGCTCTGTGCCCAGCCACCACTCCGGAAAATTCCTCGCTAAGGGTCAGCAGTGGAGAAATAGTCAAAGCCATATACAGCCATTTTACTAACTGCACCGTTAAATGTTACCTCGTTAAATGCGTTTGCTGAGGAATGCAAGTCGAGGGATGCACATTTATGTGGTTCAACATTATGAATAAATCTCGCATTTGTCTTTTCTTGCTGACAAACATTAGACTAAAAACTAAATCAGAGGAATTGCATTTGGTTTGTGATTTGTGTGAGAAACGCTGCAAAAAACGACTGTGTGGTCTGTTGATTTTGCTCATCTGGCACTGCGTCATCTGCTTTATAAGACTTTCAGTCTGTTAATGGGAGGCTTTGTTGAGCTTGATGTTACACACACTTAACAAAACATTGGCATTTGCCATTTATAAGAGCCCTTAGAAGTGCTGTAAGGTTTCCCTAGCTAACAAAGGCTGCCAAAGGCCACCAGTgcattttcaaatattatttaaaccaaAAACGCTTGTTCTGACAGATGCCAACAAATGTGCAACATGATGTAAACAATGGATCCAAAAGTAACATCTCATATAGAGGGTTTACCCAATTCTTtttatttgctgttaatttatccAATCCTTCCATAAGATGACATTTACTTAAG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00010732 True 909 lncRNA 0.42 2 19267759 19271156

Neighbor

gene id symbol gene type direction distance location
XLOC_004659 sh3bp1 coding upstream 34762 19205086 ~ 19232997 (+)
XLOC_004658 pdap1a coding upstream 63315 19199735 ~ 19204444 (+)
XLOC_004657 slc16a8 coding upstream 68988 19191787 ~ 19198771 (+)
XLOC_004656 cby1 coding upstream 76080 19188542 ~ 19191679 (+)
XLOC_004655 phf5a coding upstream 124067 19138452 ~ 19143692 (+)
XLOC_004661 tnrc6b coding downstream 10033 19281189 ~ 19301988 (+)
XLOC_004662 csnk1e coding downstream 34234 19305390 ~ 19340220 (+)
XLOC_004663 tomm22 coding downstream 77382 19348538 ~ 19353771 (+)
XLOC_004664 dmc1 coding downstream 85467 19356623 ~ 19362186 (+)
XLOC_004665 gspt1 coding downstream 91179 19362335 ~ 19383945 (+)
XLOC_004648 NA non-coding upstream 399784 18861278 ~ 18867975 (+)
XLOC_004644 AL772266.2 non-coding upstream 668795 18598850 ~ 18598964 (+)
XLOC_004635 NA non-coding upstream 1039755 18209871 ~ 18228004 (+)
XLOC_004634 BX005075.1 non-coding upstream 1141985 18125658 ~ 18125774 (+)
XLOC_004625 NA non-coding upstream 1840379 17424431 ~ 17427380 (+)
XLOC_004667 BX649366.2 non-coding downstream 116987 19388143 ~ 19388273 (+)
XLOC_004670 NA non-coding downstream 187653 19458809 ~ 19459285 (+)
XLOC_004675 NA non-coding downstream 992429 20263585 ~ 20265465 (+)
XLOC_004679 NA non-coding downstream 1220463 20491619 ~ 20504801 (+)
XLOC_004689 NA non-coding downstream 1535741 20806897 ~ 21106987 (+)

Expression


Co-expression Network