XLOC_004656 (cby1)


Basic Information

Item Value
gene id XLOC_004656
gene name cby1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 19188542 ~ 19191679 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00009225
TCCGGCGTTGCTAGGCTCCCCCCGGAATTAGCCGTTTGTTTACACATGTCTCTTATGGTTTCAGGAGCATCTAAGAAGCTGTCGTGAGGAAAATGCGTTTGTTTTATAAAAGCAGTTTCACTCCATCAATAAATTGAATACTATGTGTTAATAACGTGCATGTAAGTTACTAGTAAGTTAGCGCGAATCTCGAAGCTAACGGTAGTCTCACCTCCACGTTTGGTTAAGAAGTCAGACTATCTACTTCAAAATGCCCCTCTTTGGCAATATTTTCAGTCCCAAGAAAACCCCACCTCGAAAGTCTGCATCGCTTTCCAATCTACATACATTGGATCGGTCGACCCGTGAGATTGAATTGGGTCTGGAATATGGATCTCCTGTGATGAACATTGGTGGTCAGAGCCTCAAATTCGAAGACGGACAGTGGATTTCAGAATCGACAGCAGAAACACATCTAGTACAGAAGGAGCTTGAAGATATGAAGAGCAGTTCTAGGAGAAAGAAATAAAGGGAGGACACCTTTTATA
>TCONS_00009226
CCCCGGAATTAGCCGTTTGTTTACACATGTCTCTTATGGTTTCAGGAGCATCTAAGAAGCTGTCGTGAGGAAAATGCGTTTGTTTTATAAAAGCAGTTTCACTCCATCAATAAATTGAATACTATGTGTTAATAACGTGCATGTAAGTTACTAGTAAGTTAGCGCGAATCTCGAAGCTAACGGTAGTCTCACCTCCACGTTTGGTTAAGAAGTCAGACTATCTACTTCAAAATGCCCCTCTTTGGCAATATTTTCAGTCCCAAGAAAACCCCACCTCGAAAGTCTGCATCGCTTTCCAATCTACATACATTGGATCGGTCGACCCGTGAGATTGAATTGGGTCTGGAATATGGATCTCCTGTGATGAACATTGGTGGTCAGAGCCTCAAATTCGAAGACGGACAGTGGATTTCAGAATCAGGTGGAAATGTGTCAGGAAAAGAAGTTCAGCGACTGAAGAAGAGGAATCTACAGTTAGAGGAGGAGAATAATCTGCTCAGGCTGAAGATTGAAGTTCTTCTTGATATGCTTTCAGAATCGACAGCAGAAACACATCTAGTACAGAAGGAGCTTGAAGATATGAAGAGCAGTTCTAGGAGAAAGAAATAAAGGGAGGACACCTTTTATATTACTTtgtatatttagcttttttacatttcatttgatatttttattggcAATTATGTTAGGAGTCAATGAAGAAAAGTTTTTTAAGGATATGCAtaaccggtcaaaagtttggggtcagttttaaattgttgaatatttattacatttgaaataactgctttcttattgtatgaagttttaaatgaaatctaTACTCCAgtgattattgcttttattactattaccattaataataatattattaataacaacaataataagtaatgtctgaaggatcatgtgactctgaagaccggagtaataaagctgaaaattcatcattaaatcactggaataaataattaaataaaaatataaactacttttggacacttattttatagtgcaataacatttcacaattttacaaattGTACTGTACtgttgataaaataaatgcaccCTTGCTGAGcaagagaagcttattttaaaacatttaaaaacctgaccgacctcaaacttttgaccaatagtgtataaaatttgtttagattttttttatattaccttAAAAGGTGCTCCATTTCAAAAagaatctttgtttttttttacattcataccAAAAATCATAAACACAATAGTGCAAAATTGATTTATAAATACAGGACAATCTTGTCCAGCGTATTTACAACTAGAATCATCATTATGCAaaatcaaaatactttttaaacatACCAGTGCTGCCCCAAAATACGAATTATATTTAATTGAAATCTTTTTTACTTTGTAGCTATATTCGTCAAGCCATTACCtattattaaaaagaaacatttcatcatttaaaatataataatatgctCAATCACGTctgttcttttatatattttaataactacAGGTCTGAATAAGTATGCTTTCCATATTTCCATATTCCATATTTTGACGCTTTGTTCTCacaaatattgataaatatttataaatattattttataaatatttaaaacattaaagtaatTTGCTTGCATTTATATGCTTTCTATGAACATAAAATCGCTTAAGTGAATTTAATTTGATGACACTCAAATGTCTTTGactcataaataataaaaactaggtTCATATAAAGGCATCTTtatgcatactttttttttttcattaaaagttgtttgtattgtgttttaaAGTGACTCCCCCCAAAGCTAAATCTTTCATAAAACATGCTGCTGATTTCAATCAAATGATTTCAGATCACATAAAAAGCTGAAATTCTCACTCTTTGTGTTTGAATACAATAACCTGTAACTCTCCATGTGTAGTTCTGAACGTGTATTcaaatcacagaaaaacaaatacaCTCTTTCTTCGGTTTCACAAGATTATCCAAAAGCTGTAAAGGTTTAAACATGTACATGCTGATTTAAGAGGATTTTCATATGGAGTGTGAAGCACGTACTACATGCCTAATGTTATGTAACACTActcatgttttttctttcttcatttttaaaacaattaaaagaataTCTGAATAAA
>TCONS_00009227
GCCGTTTGTTTACACATGTCTCTTATGGTTTCAGGAGCATCTAAGAAGCTGTCGTGAGGAAAATGCGTTTGTTTTATAAAAGCAGTTTCACTCCATCAATAAATTGAATACTATGTGTTAATAACGTGCATGTAAGTTACTAGTAAGTTAGCGCGAATCTCGAAGCTAACGGTAGTCTCACCTCCACGTTTGGTGAGTCACTTTGAGATCAAGATGAACTGTCTTTTGTTCAACTTTAGTTGACTGTAATCAAAGCCGAACTCGAACACTATCACGTTGTAAAATGTTGTCGATTTACGCTTGTGTTATTGATGCAGGTTAAGAAGTCAGACTATCTACTTCAAAATGCCCCTCTTTGGCAATATTTTCAGTCCCAAGAAAACCCCACCTCGAAAGTCTGCATCGCTTTCCAATCTACATACATTGGATCGGTCGACCCGTGAGATTGAATTGGGTCTGGAATATGGATCTCCTGTGATGAACATTGGTGGTCAGAGCCTCAAATTCGAAGACGGACAGTGGATTTCAGAATCAGGTGGAAATGTGTCAGGAAAAGAAGTTCAGCGACTGAAGAAGAGGAATCTACAGTTAGAGGAGGAGAATAATCTGCTCAGGCTGAAGATTGAAGTTCTTCTTGATATGCTTTCAGAATCGACAGCAGAAACACATCTAGTACAGAAGGAGCTTGAAGATATGAAGAGCAGTTCTAGGAGAAAGAAATAAAGGGAGGACACCTTTTATATTACTTtgtatatttagcttttttacatttcatttg

Function

symbol description
cby1 Orthologous to human CBY1 (chibby family member 1, beta catenin antagonist).

GO: NA

KEGG:

id description
ko04310 Wnt signaling pathway
ko03036 Chromosome and associated proteins

ZFIN:

id description
ZDB-GENE-030131-5074 Orthologous to human CBY1 (chibby family member 1, beta catenin antagonist).

Ensembl:

ensembl_id ENSDARG00000077409

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00009225 False 527 mRNA 0.43 4 19188542 19190165
TCONS_00009226 False 2142 mRNA 0.31 5 19188561 19191679
TCONS_00009227 True 778 mRNA 0.40 4 19188572 19190201

Neighbor

gene id symbol gene type direction distance location
XLOC_004655 phf5a coding upstream 44850 19138452 ~ 19143692 (+)
XLOC_004654 kctd17 coding upstream 123244 19036380 ~ 19065298 (+)
XLOC_004653 PLBD1 coding upstream 152895 19029285 ~ 19035647 (+)
XLOC_004652 l3mbtl2 coding upstream 197364 18970790 ~ 18991178 (+)
XLOC_004651 cbx7b coding upstream 265566 18916285 ~ 18922976 (+)
XLOC_004657 slc16a8 coding downstream 108 19191787 ~ 19198771 (+)
XLOC_004658 pdap1a coding downstream 8056 19199735 ~ 19204444 (+)
XLOC_004659 sh3bp1 coding downstream 13407 19205086 ~ 19232997 (+)
XLOC_004660 NA coding downstream 76080 19267759 ~ 19271156 (+)
XLOC_004661 tnrc6b coding downstream 89510 19281189 ~ 19301988 (+)
XLOC_004648 NA non-coding upstream 320567 18861278 ~ 18867975 (+)
XLOC_004644 AL772266.2 non-coding upstream 589578 18598850 ~ 18598964 (+)
XLOC_004635 NA non-coding upstream 960538 18209871 ~ 18228004 (+)
XLOC_004634 BX005075.1 non-coding upstream 1062768 18125658 ~ 18125774 (+)
XLOC_004625 NA non-coding upstream 1761162 17424431 ~ 17427380 (+)
XLOC_004667 BX649366.2 non-coding downstream 196464 19388143 ~ 19388273 (+)
XLOC_004670 NA non-coding downstream 267130 19458809 ~ 19459285 (+)
XLOC_004675 NA non-coding downstream 1071906 20263585 ~ 20265465 (+)
XLOC_004679 NA non-coding downstream 1299940 20491619 ~ 20504801 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G263230 NA unknown CI01000063 null 2325112 ~ 2327719 (-)