XLOC_004658 (pdap1a)


Basic Information

Item Value
gene id XLOC_004658
gene name pdap1a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 19199735 ~ 19204444 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00009230
ATCAAGAGCAAATTCGGCTGACGTCACTCAGGAAGCGGCAAATAGTGCTTTCACAGTCAGGTTTTGCGTCGGCGAGGTTTAGtcacatttactttaaaacaGCCCATTTTTAGATAATTtgacataatataataaagttaatCAATCCTTACGGGTATATGCAATTGTAGGAGCGGAAGTAATATTTTTCCTTTCAGTATTTTCATCGCCACAGACTGTTTGCACAATGCCGAGAGGAGGTAAAAAGGGCCACAAGGGCCGTGGAAAGCAGTTCAGCAACCCCGAGGAGATTGACCGTCAGATGAGAGCTCAAAAGGAGTTGGAGGAGAATGGAGGAGCTGAACGTGGAAGTTCTTCAGAATCAGAAGAGGAGACCAGCAGTGATGATGAACAACCTAAAAGGAAAGGTGTTGAAGGATTAATTGAAATTGAGAATCCCAATAGAGTTTCCCAGAAGAGCAAGAAGGTTGTGGAAATTGATGTCAATGCACCTAAAGAGCTATCGCGACGAGAAAGGGAGGAGATTGAAAAGCAGAAGGCTAAAGAACGATACATGAAGCTGCATCTCGAGGGGAAGACGGAGCAGGCCAGGGCAGACCTTGCCAGGCTGGCCATTATTAAAAAGCAGAGAGAGGATGCAGCGAAGAAGAGAGAAGAGCTGAGGAAAGAAAAAGAAGCAGAAGAGGCGAAGTCGAAACGCTAACCTGTGCATCATCACACCAGACGGGGGCTTTTCTGGGGAGGGAGGGCGGAAGGGAAGGAAGGGGGCTAGATATTTAGAGAAAACAGCTCAGGGGTATCCATACATGTCATcctccctccatccattcatctaatgCTGGAGGGAGATTTTGACATTTATAGGAAGTTAGATGGGAGGCGGTGTATGGTGTTGGAGTTTGGAGTAGTCATTTTCAGTACCACCAAACTTCACACACCTTATTCCCTTCCTTGACACATTCACTGTGCTCAGACTCTAAAGCTGCTGAAGTTTACTCTAAATGTCTACACTTCTATGATGTTTTCACCATTTCATTAGATTGGGAGGTTATGGAAGATTGAGGTGTGGGGTTGCAGGTGTTGCTCACTTCAGCTGTTGTGTTCTGACGGGGACAGATGAAGCAGGTTGTAGACTAGAACAGTCAAACACTAAACAGACATTCAGTGTTTTTATGTAAAGAATGACATCAATACTGGTACTGTCTTCAGTTTCGTCCACCTTTGTGGCCTCATTCTGTTTAAGTGCAAAACAAAGCAGATGTTGTCATTTCAAGGGTATTGGTAGGGTGTTGCTTGAAATCAGGACGTGCATGGACTTAATGCTGCAGCTTTTCAATACTGAAAGACAATataatgcaatttaattttgGAACAAAGTATCGCTTTCATCAGGACAGtattaaaggagctgcttcagcACAGCTGACAGACTAAGCGGTTGAATTTCTCCGCAACACCTCAGGATAGAGTATTCACTGTATCATCTTCTATAATGCCCCTTTACTCAGGGGTTTTATACTTCTCTTCAAGTGGGACCATTGTTTTGGCACAACCAGACACTGATGTGTCCTCAAACTATTTAGAAGTGTTTTATGCTTTAGCCCAATTCTGGGACCGGACATGCCTTGACTGTTTAAGGAAAGCAATATTGTATTGATGCTGATGGTGCAACCTTTTTTTTCCAGTTCTTAAACACAACTATTTGCATAATGTTTTAACGTTTGTAAAGCATTCATCAGTACTGAAATATTTACATGGGATATTGATCAATCAATAAAGTTCCTTATTTGAaacttgtataaaaaataaataaattggtaaatgaataaaattgtttCGCTTTTGTGAGTCAATTACTTTGAGTTTGTTTTTAAGGAATGTTATTTTTTTGGGAAGCTTTGTTTTAGTAAAACTACATTTGATGCAGAGgtcatatttagtttttttagtatTACCATGGCCACCCCTGTGTAAGCTCTGCCCACCCCAATATGATCTAGCTGttgataatattaattaaaatgtacttgcataaaatcacaatattttaataaataaaatgcagccactaaa

Function

symbol description
pdap1a Predicted to be active in cytosol. Orthologous to human PDAP1 (PDGFA associated protein 1).

GO:

id name namespace
GO:0005829 cytosol cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-1693 Predicted to be active in cytosol. Orthologous to human PDAP1 (PDGFA associated protein 1).

Ensembl:

ensembl_id ENSDARG00000092546

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00009230 True 2073 mRNA 0.41 6 19199735 19204444

Neighbor

gene id symbol gene type direction distance location
XLOC_004657 slc16a8 coding upstream 964 19191787 ~ 19198771 (+)
XLOC_004656 cby1 coding upstream 8056 19188542 ~ 19191679 (+)
XLOC_004655 phf5a coding upstream 56043 19138452 ~ 19143692 (+)
XLOC_004654 kctd17 coding upstream 134437 19036380 ~ 19065298 (+)
XLOC_004653 PLBD1 coding upstream 164088 19029285 ~ 19035647 (+)
XLOC_004659 sh3bp1 coding downstream 642 19205086 ~ 19232997 (+)
XLOC_004660 NA coding downstream 63315 19267759 ~ 19271156 (+)
XLOC_004661 tnrc6b coding downstream 76745 19281189 ~ 19301988 (+)
XLOC_004662 csnk1e coding downstream 100946 19305390 ~ 19340220 (+)
XLOC_004663 tomm22 coding downstream 144094 19348538 ~ 19353771 (+)
XLOC_004648 NA non-coding upstream 331760 18861278 ~ 18867975 (+)
XLOC_004644 AL772266.2 non-coding upstream 600771 18598850 ~ 18598964 (+)
XLOC_004635 NA non-coding upstream 971731 18209871 ~ 18228004 (+)
XLOC_004634 BX005075.1 non-coding upstream 1073961 18125658 ~ 18125774 (+)
XLOC_004625 NA non-coding upstream 1772355 17424431 ~ 17427380 (+)
XLOC_004667 BX649366.2 non-coding downstream 183699 19388143 ~ 19388273 (+)
XLOC_004670 NA non-coding downstream 254365 19458809 ~ 19459285 (+)
XLOC_004675 NA non-coding downstream 1059141 20263585 ~ 20265465 (+)
XLOC_004679 NA non-coding downstream 1287175 20491619 ~ 20504801 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G262352 NA non-coding CI01000063 null 2313709 ~ 2318205 (+)