XLOC_004661 (tnrc6b)


Basic Information

Item Value
gene id XLOC_004661
gene name tnrc6b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 19281189 ~ 19301988 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00009233
caccgaGCAGTAAAATGGCCGACCGTCAACCAACTGACTTTACAGCGCTTTAAACATAGATTCCGCCTCTTTCGTTTACATTAtcgtatttcatatttaaaacctACAGAAGGAGTGTTTTCATGACTAGCTCATAGATATTGATGGAGTATTGTATTTCACGTTGCCTCAAAACCCAGAAATTCGCACTTAAGCACTTTAGCTGTAGCTAGAAGACTAGCTGCGGTGCATGTAATTCCTGAGaAAGGAGCACCAGGAAAGGGAACAGCAGTTCATGGAAGACAAGAAAAGGAAAAAGGAAGATAAAAGGAAACGGGAAACCTCGCAGAAGgtTGCAGAGCAAAAAAATAAAGTGCCAGAATTGACCAAGCCTCCATCTGCACAGTCTCCTGCCGCCCCCAACTCAGCTTCCCCCAGCCCTGGCCCCGTCCCCTCTTCAACCCCATCCGCTGCCACCCCGGCTGCTGGCACCCTCCCTCAGGGTGGGAACAATGCTAAGCGGCCGGCGGTGGCCAACGGACAGCCCTCCCCCAGCACACCGAATTCTCAGCGCTACATGCCCCGTGAAGTGCCCCCTCGATTCCGTTGCCAGCAGGACCATAAAGTGCTACTGAAGAGGGGCCAGCCACCACTGTCCTCCATGCTGCTGGGGGGAGGCAACAGCGGGGGAGACAGCCCCAATGAAACAGTGGCTTCTGCCTCAGatccAAGCCAGGGCCCTGTGGGTCCAGCTGCTCCCTCACTGCCCCATACGTCATCCGCCTCATCAATCgctgcttcttcttcttcaaatTATGCAAATTCCATGTGGGGGACCAGCTCTGGCAGCCATCCCCTCTCTCAGGGCAGGGAAAAGGTGATAGTGGACCGGTCAGACCTGGAGGAATGGCCCAGTATTGCTGCTGGGGATGGATCAAAGTCAGGGGATGCAGCAGGTACAGGAGGTACAGACAGTGGTGCGATTCTGAACTGCAATGCCTCGTGGGGTGAGAGGCATCTCCAGCAGCAAGCGAAAGTTGTGGGAGGAGGGAATGGAAGGAAAGGAGTCAATTCTGGCAGTTCCTCTCCGCCCACATCCTCTGGATCACCCAATGAATGTATGCAGTCTGGTAGTGTTTGGGCTTCATCCTCCCATGAACTCATAGGGGGGAATGCAGTAGCAGCAGGCTCATTGCCCCCCATATCCAAAGCTGCCCCTCTCCCAGGGAGCTCTGATAGCTCCTTTGGTGTCAGCTGTGGGATTCCAGGTGCCAATTTTACCCCTAATGCCAATCCCTCTGCTTGGCCAGCCCTAGTACAGGAAGGGGCTGGGACAGTTGCAACAGAGGGTGGCTCCTCTTCCCTCCAAAGCTCATCTTTGTCTGCCAGCAACCCTCTTTCTGTGAATCAAGCCTCTCATCAGCACCAACTTCACCAAATGCAATCCAGAGACAGAGAGCCATCCTGTGGAGAATGGGGTGGCACAGCACTGGAACCAGGAGCAGGACCAAAAAACACTGGGGTGACAGAGGGGGCTGATATGGACTCTGGAAGCACAGGTGGAGGAGCAGGCTCTGCTTCGTCTTCCTCCTCCACCAGCTCATCATTGTGGAGAACTCAGCCTTTCCCTGCAAACTTCAAAACGGGTGCCTCAAGGACTGAATCTTGGGATGATGGAGCAGGAGGGAGCTCCTTGTCTGCTGAAAGTGGGAAGGCATGGGGATATCCCGGCCAGGACGATCGAGGAGATTTGACGGGGGCAGGTGCCTGGGGAACAGGAAGTGGGGGTCAGACCCCCGGGGTATCTCAGGGAGCGTGGGGTGGGGACCATTTGTTGGGTGGGGAATGGGGGGCATCCAGTGGTGTTGGAGGTGTCAGTGATCAAGGTGGGAAAGACGGCTCAAGCAGTAACAGCAGCAGTAGTGGCGGTAGTGTCAGCATCCCGACGACAACCTCCTCCACACCTTCAACTATGACAAGAGCTTGGGACAATCAGAAAGCAGTTGGGGATGTGGGAGCAGGAGATTTGAGTGAGTGGGGAGGCCAGGGTAGCAGAGGTGGGGAAGGTACCTCATCCTCCAGTGGTGGAGGAAACTCCAGAAGTGGCAATCAGCGCCATGGCCACCACCGCACTCATAAGCCTCCTGACCCTGAAGTGGCCTTACAGGATCTGCTTAGCCGGTCGGATCTGGACCCCAGAGTGCTGTCCAATACTGGTTGGGGTCAGACACAAATCCGTCAGAATGTGGCATGGGATTTGGAAGATGGAGGCAGAGCAAAAGCACCAGGTGGAGCAAATTCCTTATCTATTGGTTCATCTGCTCATGCCCAGCCATACTCTGGTCCTAGTGGGAGCACAACTACTGATCCATCTTCCCCCTCTCTGCTCCAAGCTGCATCTCTGAATGCCAACTTAAACTCAAACTCCATCCTTGGACCACCTGCAGTTTCATCTGGTGAAGGTTGGGACAACAGTAGTAGCAACAGCAGTTCTTTGCATACCCGAGGCCCTCCACCCTCAGGTGTCAATATCCAAAACCCTAGCGTCTCACAATCTGGAGGTGGAGGAGGTAGCTCAGCTGGTGGGCAGGGCATGCCATCTGGGGGTTGGGGAGGGACTGCATCATCAGAAGGCCAAGTAAAGGGCTGGGAAAGCGAGGGACATGAGTGGCGAGAACGGCGAGCAGGAGGTTCGTCAGGTGGGTGGGGAGATTTCCAAACACAGGGTACTCCATCAACAGGAGGAAGTGGCTGGGGAGATAGTCAGGAGGAGAAAGGAACAAGATCAAGTGGATGGAAAGAAATGGGGAGGGTGGATGCAGGCAGCTGGGGACCGAGAGGTACCAGCGACTGGGGAGAAAAAGAGTCTAAATCGTGTAGTGGGGGGTGGGATGGAAAGGGTGGTGGAGGTACTAGTGGAGACTCAGAAGTGGGTACATGGGGTAATTGGGATGATGGAACTCCTGGAGGGACATGGGGAGGGGTGGGTGGAGACATGGGTGGAAAATCTCACCAAGGTTGGGGTGGGAAGATGCACCCTTCACAAATGCCAAACAGCCAATCAGCCTCACAGAAAGGCCCggcacagcagcagcagcaaccaCAATCACAGCCTCAGCAGTGTCAGTCAGTGGACACAGGGGCCATGCAAGGGGGCTGGGGAAGACCAGCAGGTCCTTCAGTCCAGAGCCAAAGTTCAGGGTGGAATTCAGGGCCTATACCCCAAATTTCCAATGGCCCTGGAGAGACTTCAGAGCCCAGCGGTTGGGAGGAGCCTTCTCCACAGTCCATCAGCAGGAAAATGGAAATTGATGATGGAACATCTGCTTGGGGTGACCCCAGCAACTACAACTACAAAAGTGTCAACTTGTGGGATAAAAACAATGCCCCATCTGGCCAGGCACAATCAGTGTCCCCTCAGCAGGGCCCCCCACCCCTGCAACAGCCGCCACCAGGAAGAATGCCAACAGGTCTTGGGAATAGGGACATGAACATTGCACATTCAGCAAGCAAGGGGCCAGGAATAGcttCTGGGTGGGGAGGTCGTGGCTCTCCTTCCAGTCCTTGTGTGGACAATGGTACTTCAGCCTGGGGTAAACCTACTGAAGCTCCCACTGGTTGGGATGACAGTGGCAAGGCCTCAAGTTGGGGGGATCCCTCATCCAATCCAGTGAAGTCTGGTTCAAAGTCTATGCAAGAAGGTTGGGTAGAAGGAGAGGGTTCAGTCAGTGCTTCGCGTAACCCTAGCTGGGAGGAGGAGGATGAGAGTGGTGGTGTTTGGAATAGTGCTGGTTCCCAAGGCAGCAGCTCTTCATATAATTCTGGAGGCTGGGGAGCCAAAAAGGGCAACAAGgGCTCCTTGAAGGGTGCAGGAGATTCTTGGATGAACCCAATGTCAAGACAGTTTTCAAATATGGGAATTTTGGGAGAGGACGCAGGTGGCCGTTCCTTGGATTTGGCCCCTGGTCCTCCACAGGACAAAAAGATGGAAGGAGAGAAGCGTGGCATGGGCTTAAACGAGTACAATGGAGAGATGCGTAAAGGAGGTCGTGGAGGTGGGGCAGGAGCAGTCTTCCGTTCACCTGGTTCCAAAGAGGTGGGAGCTTGTGAACCTGGGCCTTACTATGACAAGGCAAGTGGTCAGTTGTTTAGTAGCGGAGGAGGGATGGCACAGTCAAGGCACCAACCAGGGGTGCCACCCATCAACCCATCAGTGCGAGCACAAGTGCCTCATCAGTTCCTGTCACCTCAGGTGCCAGGCTCTGTTCTGAAACAGATGCCTCCTCCCAGTGGAGGTGTTGGGGGAGGCATCTTTCCTCCACAGCTTTCCCCTCAGCACATTGCCATGCTCAGCAGCATCTACCCACCACATCTTCAGTTCCAGCTGGCCTGTCAGCTCCTACTGCAACAGCAACCgcagcaacaacagcagcagcagctgtTACAGAACCAGCGCAAGTTCCCCCCAAACATACGACAACAAGCAGACCCCCAACAGCTGGCCAGAATCATGGCTGTTCTTCAGCAGCAAAGACAACAGCAGCAGCATGTGGGAGGTACAGGGGGCAGCTCCAAACTCTCTCCTTCTCATCTTGGAGGAAGTGGCCCAAAGATGCCAATGTCCGACCCCCTTTCACACCCTGGCTTGGCAGGATCTGTTGCGGACCTACATCAGAAAACACAAGGAGCTTACTCTGGGTTTGGGCCTGGAATGAGTCTCTCTGGTCTGGAATTGGGTCCCATGGTTGGTGGGCCAGCTGGGCTGAAAGACAGTGGGGGGCAGCAGTCTCGTTTCAAATGGATGATGGAAGGCCATTCTCCAGCACCTTCACCTCCTGATAGCACTCTTCATAAAAATGGTCCCATTGCTGCTCCTCTTAAAATGAGAGGTGGTTCCCCGTATTCCCAGTACGAGATGCTAGGAGGTGGTGAGGGTTTAGGTGTTCCTCCACAGGGGCCATCAGATCACTGGCACAGAAGTCCTGGAAACAAAATGGGCACCAAAACTGGCACATCAAGCTGGCCTCCAGAGTTTCAACCTGGAGTGCCTTGGAAAGGACGTCCGAATGTGGACACTGACTCTGATCCCTACATGACCCCTGGAAGTATGTTGGGTTCATCGATGTCAAGCCTCAATGACACTGAGCATCAACTGCTAAGAGACAACACAGAATCAAATCCCTCCCTCAACACCTTGCTGCCTTCACCTGGTGCCTGGCCCTACAGTGCCTCAGAGAGCCCCCTAACCAATGCACACAATCCAGCTAAGTACACAGACTACAAGCCCAGCTGGCCACCTGAGCCAATAGGGCACAACAAGCCTTGGAAGACCAATCGCAACAACTCTCATCTGCCACGCCCACCTCCTGGACTGACCCATCAGAAGCAGCCTTCAGTTTCTCCCTGGACGAGTGGAGGCCCACGAGTGGGTAGAGGATGGGGCGGCTCTGGAGGCAGCCAAGAAAACAGATTTGGGCCTGGTTCTGCGTGGAGTGATGGAGGAGCCTCTAAGGGGAGCTGCTGGCTGGTTTTGAGTAATCTTACCCCTCAGATTGATGGCTCCACTTTGAGGACTATCTGTATGCAGCATGGACCGCTTTTGACCTTTCACCTCGGTTTGACCCAAGGTAGTGCTCTAATTCGCTACAGCTCTCGCCAAGAAGCAGCCAAAGCCCAGAGCGCACTTCACATGTGTGTTTTAGGTAACACCACAATCCTGGCCGAGTTCGTAAGCGAAGAGGAGGTCGCTCGCTATTTTGCACATTCCCAGGCCGGAGCAGCTGGAAGCGGCAGCGGAGGGAGCGGGGCCGGCGGTGTGGCCGTCTCAGGGCCGGCAGGTGTGGCGGGATCATCAGGGGCTGGAGCCGTGGGTACAATCAGTGCTGCGAGTGGTGACCGAGAACGTGCCGCAGTAGGAAGTCTAACAGCAGGAGGAAGCAGCAACAGTGGTGGAACCGGCCCCTCAGGCTCTACGTGGCAGAGTTTGGATGGTACGGGCAGCTCGTCTGACCCAGCCTCAGCACAGGGAGCAGGCCTGAGCATTTTCGCCCAGTGGAGCAGCAACGGTGCTGGTGGCAGCAATGCAGCGGGCGTTGATCCCGGAAGAGCCGGGCTGTGGGGCGGCATGACTCCAGGCTACACAGGCAGCAGTCTGTGGGCTTCACCAGCCATGGAAGATCGGCATCAGATGAACAGTCCTGCCGCGCTGCTACCCGGAGACCTGCTAGGAGGAGGTGCAGACTCAATCTGACTGATGCAGACACTTacagacaaataaaaacacacacgcacacacatgacagatatataaatataaccgTTATGTTATCTCAAACACACGCAGGAACACATTAATACGAATACAGGCGGTTTATGTATATGGCCTCTGCAACTCAGACAGCCACATAACGcataaatatacaacaaaatatttaGTATACATTCGTAACACCTATGTAGACCAGATTCAGTGATAAGCACTCAAACAGCAGATGCCAGGTAAACACTTAAGGAGCAGATCCACTGCATTACCAAACCTAGCAAAACGCATTAAGATGAAATTGTTAATGACACTGGTTACAAATGTACacacactgttattattattattaatattattattttttacctgAGCAGTGTTTTAAGCTCCTCGTAAATCTAATGTTGGTAGGAGCGCAGAGGAGCAGTGTGTGGACATAAGGCAGTACTGAtagacacgcgcacacacatatagatacacacacacacacacactcatttcttCTTATTCTTAAATGAAGACTTCAGCAAGACTTGAACAGGACATGCAAACAGTTGGACTTAAATACTGACTCAACTGGATGAATCCTAAACCTTGAGGTCATAAAGATCACACTCGCATACTGAGACGCTCTCACTCAGGCGTGCACTGTAAAGGAAAAagcagacaaaaaacaaaacaaaggacaAAAATATGCATCATACAATGTTCGTTGAACGCTCGCGTTGTTACGGCTCCATTTCCATGCAGACTTAAATTACTCAAACACTGTTCTGATGTCTGACAAACTGTAACTTCtcgttgtcttttttatttttgttttttggtttgttttaaatgatggtgaaatccagaatttgttttttttccaaaaaaaaaaaaaaaaaaaacgctgacctcggttttttttttctttcttcttaatCGAGTATGTTGTCATAATGACGATCACTTGGATGTTACTTAGCTGTACAAGGTGCCCTTTCTGCCTGTGCGTGCATGAGTGAAGTCCCAGGTGATGGAGGCGACGTTCCTAGTGTTTTGCGAGGCATCGATGAATGTGTGGCAGCCAGAGATTAACAAGCGTGGTGTATTTACAAAGATCAGTGCTGGATTAGGGAGGTGAGTAAATGTATGAGTGACAGCTTTATTTCAGGTGTTTGATGTCTATGTGTGCATGATATGTATGCAGCTgtggctgtgagtgtgtgtgtgagagtgagcgAGTGTGTGTAGACAGCAAGTTCAAGAACATTGGCACTAATGAatatttcttaagttgtggttttAGCAGccttttctgttttatatattgtCTGAAttgcaataattataataaagaaaaaaagatttttttagaaGATGCAACCAACTGAAGGCATTCATACTGAAACATGAAACATGCCAAACCTTATTGTACCAAGCTGAGCTGGATATATGGGTGTTTTAGGAACACTTAAAAAGTAccagttgtttatttttgttgttgtgtacCATTATAAATTAAGGCGGGCTTTATCACTCGTGttcaggttttttttctgtttgtttgtttctgattttacaaaagaaattaatttaaaaaagaacaagacAATTAATAAAGGTTGAATTTAATTTCGTTGTCAA

Function

symbol description
tnrc6b Predicted to enable nucleic acid binding activity. Predicted to be involved in gene silencing by miRNA and positive regulation of nuclear-transcribed mRNA poly(A) tail shortening. Predicted to act upstream of or within miRNA mediated inhibition of translation. Predicted to be active in P-body and nucleoplasm. Human ortholog(s) of this gene implicated in subserous uterine fibroid and uterine fibroid. Orthologous to human TNRC6B (trinucleotide repeat containing adaptor 6B).

GO:

id name namespace
GO:0035278 miRNA mediated inhibition of translation biological_process
GO:0060213 positive regulation of nuclear-transcribed mRNA poly(A) tail shortening biological_process
GO:0035195 gene silencing by miRNA biological_process
GO:0000932 P-body cellular_component
GO:0005654 nucleoplasm cellular_component
GO:0003676 nucleic acid binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-13 Predicted to enable nucleic acid binding activity. Predicted to be involved in gene silencing by miRNA and positive regulation of nuclear-transcribed mRNA poly(A) tail shortening. Predicted to act upstream of or within miRNA mediated inhibition of translation. Predicted to be active in P-body and nucleoplasm. Human ortholog(s) of this gene implicated in subserous uterine fibroid and uterine fibroid. Orthologous to human TNRC6B (trinucleotide repeat containing adaptor 6B).

Ensembl:

ensembl_id ENSDARG00000074161

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00009233 True 7867 mRNA 0.51 21 19281189 19301988

Neighbor

gene id symbol gene type direction distance location
XLOC_004660 NA coding upstream 10033 19267759 ~ 19271156 (+)
XLOC_004659 sh3bp1 coding upstream 48192 19205086 ~ 19232997 (+)
XLOC_004658 pdap1a coding upstream 76745 19199735 ~ 19204444 (+)
XLOC_004657 slc16a8 coding upstream 82418 19191787 ~ 19198771 (+)
XLOC_004656 cby1 coding upstream 89510 19188542 ~ 19191679 (+)
XLOC_004662 csnk1e coding downstream 3402 19305390 ~ 19340220 (+)
XLOC_004663 tomm22 coding downstream 46550 19348538 ~ 19353771 (+)
XLOC_004664 dmc1 coding downstream 54635 19356623 ~ 19362186 (+)
XLOC_004665 gspt1 coding downstream 60347 19362335 ~ 19383945 (+)
XLOC_004666 rsl1d1 coding downstream 82627 19384615 ~ 19393968 (+)
XLOC_004648 NA non-coding upstream 413214 18861278 ~ 18867975 (+)
XLOC_004644 AL772266.2 non-coding upstream 682225 18598850 ~ 18598964 (+)
XLOC_004635 NA non-coding upstream 1053185 18209871 ~ 18228004 (+)
XLOC_004634 BX005075.1 non-coding upstream 1155415 18125658 ~ 18125774 (+)
XLOC_004667 BX649366.2 non-coding downstream 86155 19388143 ~ 19388273 (+)
XLOC_004670 NA non-coding downstream 156821 19458809 ~ 19459285 (+)
XLOC_004675 NA non-coding downstream 961597 20263585 ~ 20265465 (+)
XLOC_004679 NA non-coding downstream 1189631 20491619 ~ 20504801 (+)
XLOC_004689 NA non-coding downstream 1504909 20806897 ~ 21106987 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000063_02234891_02253083 NA coding CI01000063 null 2233613 ~ 2253083 (-)
bowfin (Amia calva) AMCG00014982 NA coding CM030128.1 CM030128.1 41704455 ~ 41724237 (-)