XLOC_004664 (dmc1)


Basic Information

Item Value
gene id XLOC_004664
gene name dmc1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 19356623 ~ 19362186 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00009239
ACGCCGAGCCAAAGTGTCAACATACGATTGTGGCGCGAAATTTCTTTCAGCTTCTTCTCAGGAATAAACGACAgTATGAAAGTTTTGGAGGAACAAACTTTGGAAGAGGAGTCGGGATACCAAGATGATGAGGAATCCTTTTTTCAAGACATTGAGCTCTTGCAGAAGCATGGCATTAACGTGGCCGACATAAAGAAACTGAAGTCTGTAGGGATTTGTACGGTGAAAGGCATCCAGATGACCACACGCCGTGCTCTCTGTAACATAAAGGGACTTTCTGAAGCTAAAGTGGATAAAATTAAAGAAGCCGCTGGAAAGTTGCTGACATGCGGATTCCAGACAGCATCTGAATACTGCATCAAGAGAAAGCAAGTGTTTCACATCACAACTGGCAGTTTGGAGTTTGACAAACTCCTTGGAGGAGGTGTGGAGAGTATGGCCATCACCGAGGCTTTTGGTGAATTCAGAACTGGAAAGACTCagctctcacatactctgtgtGtTACTGCTCAGCTTCCTGGGGAATATGGGTACACAGGAGGAAAGGTCATCTTCATTGATACCGAAAACACCTTTCGGCCTGAGAGGCTGAAGGACATCGCTGACAGATTCAATGTGGATCATGACGCTGTTCTGGACAATGTGCTTTATGCACGTGCGTATACCAgTGAGCATCAGATGGAACTGCTGGACTTTGTTGCAGCCAAGTTTCATGAAGAAGGTGGTGTCTTCAAGCTTTTGATAATAGACTCAATAATGGCTCTGTTCCGGGTGGACTTCTCTGGAAGAGGAGAATTGGCAGAGAGACAGCAGAAGCTTGCACAAATGCTCTCTAGACTGCAGAAGATTTCTGAAGAGTACAATGTTGCTGTGTTTGTCACAAACCAGATGACTGCAGACCCAGGAGCTGGAATGACATTTCAAGCAGATCCTAAAAAGCCTATTGGAGGACACATACTGGCACACGCCTCTACCACACGCATCAGCCTGAGGAAAGGCCGTGCTGAACTGAGAATTGCCAAGATATTTGACAGCCCACACATGCCAGAAAACGAAGCTACTTTTGCCATTACGGCTGGAGGAATAACAGACGCAAAAGACTAAAACTGCACAGAAAGAGTGTTAATAAAATGTCTTCAGTTTGTTCTTGCTGGAATCTGTTCAGGTGAATACTCAAATCTGCtgtacctatttatttattatttgattcatCATACACCTGTATCTCTGCATTAAATGAATACAATGTACATTTATGTTTTCACTTGGTCTAATTGTAAtagtttgttatatatttatacaagtcaagttatattgtaaatataattacattaaaatggtTAAATGCAA

Function

symbol description
dmc1 Predicted to enable DNA binding activity and catalytic activity, acting on DNA. Predicted to be involved in DNA recombination and chromosome organization involved in meiotic cell cycle. Predicted to act upstream of or within DNA repair and meiotic cell cycle. Predicted to be located in nucleus. Predicted to be active in condensed nuclear chromosome. Is expressed in ovary and testis. Orthologous to human DMC1 (DNA meiotic recombinase 1).

GO:

id name namespace
GO:0006312 mitotic recombination biological_process
GO:0042148 strand invasion biological_process
GO:0010212 response to ionizing radiation biological_process
GO:0051321 meiotic cell cycle biological_process
GO:0000730 DNA recombinase assembly biological_process
GO:0007131 reciprocal meiotic recombination biological_process
GO:0006259 DNA metabolic process biological_process
GO:0070192 chromosome organization involved in meiotic cell cycle biological_process
GO:0006281 DNA repair biological_process
GO:0000794 condensed nuclear chromosome cellular_component
GO:0005634 nucleus cellular_component
GO:0005524 ATP binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003690 double-stranded DNA binding molecular_function
GO:0000150 recombinase activity molecular_function
GO:0003697 single-stranded DNA binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0008094 DNA-dependent ATPase activity molecular_function

KEGG:

id description
ko04113 Meiosis - yeast
ko03400 DNA repair and recombination proteins

ZFIN:

id description
ZDB-GENE-060331-93 Predicted to enable DNA binding activity and catalytic activity, acting on DNA. Predicted to be involved in DNA recombination and chromosome organization involved in meiotic cell cycle. Predicted to act upstream of or within DNA repair and meiotic cell cycle. Predicted to be located in nucleus. Predicted to be active in condensed nuclear chromosome. Is expressed in ovary and testis. Orthologous to human DMC1 (DNA meiotic recombinase 1).

Ensembl:

ensembl_id ENSDARG00000055883

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00009239 True 1350 mRNA 0.42 14 19356623 19362186

Neighbor

gene id symbol gene type direction distance location
XLOC_004663 tomm22 coding upstream 2852 19348538 ~ 19353771 (+)
XLOC_004662 csnk1e coding upstream 16403 19305390 ~ 19340220 (+)
XLOC_004661 tnrc6b coding upstream 54635 19281189 ~ 19301988 (+)
XLOC_004660 NA coding upstream 85467 19267759 ~ 19271156 (+)
XLOC_004659 sh3bp1 coding upstream 123626 19205086 ~ 19232997 (+)
XLOC_004665 gspt1 coding downstream 149 19362335 ~ 19383945 (+)
XLOC_004666 rsl1d1 coding downstream 22429 19384615 ~ 19393968 (+)
XLOC_004667 BX649366.2 coding downstream 25957 19388143 ~ 19388273 (+)
XLOC_004668 si:dkey-16i5.8 coding downstream 39668 19401854 ~ 19402950 (+)
XLOC_004669 snx29 coding downstream 46187 19408373 ~ 19659256 (+)
XLOC_004648 NA non-coding upstream 488648 18861278 ~ 18867975 (+)
XLOC_004644 AL772266.2 non-coding upstream 757659 18598850 ~ 18598964 (+)
XLOC_004635 NA non-coding upstream 1128619 18209871 ~ 18228004 (+)
XLOC_004634 BX005075.1 non-coding upstream 1230849 18125658 ~ 18125774 (+)
XLOC_004670 NA non-coding downstream 96623 19458809 ~ 19459285 (+)
XLOC_004675 NA non-coding downstream 901399 20263585 ~ 20265465 (+)
XLOC_004679 NA non-coding downstream 1129433 20491619 ~ 20504801 (+)
XLOC_004689 NA non-coding downstream 1444711 20806897 ~ 21106987 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000063_02195608_02203412 DMC1 coding CI01000063 null 2195579 ~ 2204155 (-)